miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31250_ppy-mir-875:mirbase
Length = 76
Score = 151 bits (76), Expect = 8e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaatactgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaatactgagg 60
Query: 61 ttgtgtctcactgaac 76
||||||||||||||||
Sbjct: 61 ttgtgtctcactgaac 76
>30606_ptr-mir-875:mirbase
Length = 75
Score = 149 bits (75), Expect = 3e-37
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaatactgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaatactgagg 60
Query: 61 ttgtgtctcactgaa 75
|||||||||||||||
Sbjct: 61 ttgtgtctcactgaa 75
>28127_mml-mir-875:mirbase
Length = 76
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaatactgagg 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 ttagtggtactatacctcagttttatcaggtgttcctaaaatcacctggaaatactgagg 60
Query: 61 ttgtgtctcactgaac 76
||||||||||||||||
Sbjct: 61 ttgtgtctcactgaac 76
>28128_mml-mir-875:mirbase
Length = 76
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaatactgagg 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 ttagtggtactatacctcagttttatcaggtgttcctaaaatcacctggaaatactgagg 60
Query: 61 ttgtgtctcactgaac 76
||||||||||||||||
Sbjct: 61 ttgtgtctcactgaac 76
>29013_hsa-mir-875:mirbase
Length = 76
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaatactgagg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaacactgagg 60
Query: 61 ttgtgtctcactgaac 76
||||||||||||||||
Sbjct: 61 ttgtgtctcactgaac 76
>29014_hsa-mir-875:mirbase
Length = 76
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaatactgagg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaatcacctggaaacactgagg 60
Query: 61 ttgtgtctcactgaac 76
||||||||||||||||
Sbjct: 61 ttgtgtctcactgaac 76
>26910_cfa-mir-875:mirbase
Length = 74
Score = 123 bits (62), Expect = 2e-29
Identities = 72/74 (97%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 4 gtggtactatacctcagttttatcaggtgttctt-aaaatcacctggaaatactgaggtt 62
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 60
Query: 63 gtgtctcactgaac 76
|||| |||||||||
Sbjct: 61 gtgtttcactgaac 74
>33461_bta-mir-875:mirbase
Length = 77
Score = 113 bits (57), Expect = 2e-26
Identities = 73/77 (94%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 ttagtggtactatacctcagttttatcaggtgttctt-aaaatcacctggaaatactgag 59
||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1 ttagtgggactatacctcagttttatcaggtgttatttaaaatcacctggaaatactgag 60
Query: 60 gttgtgtctcactgaac 76
||||||| |||||||||
Sbjct: 61 gttgtgtttcactgaac 77
>31566_oan-mir-875:mirbase
Length = 79
Score = 97.6 bits (49), Expect = 1e-21
Identities = 71/77 (92%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 ttagtggtactatacctcagttttatcaggtgttcttaaaat-cacctggaaatactgag 59
|||||||||| |||||||||| ||||||||||||||| ||| ||||||| |||||||||
Sbjct: 3 ttagtggtacaatacctcagtcttatcaggtgttctttcaattcacctggcaatactgag 62
Query: 60 gttgtgtctcactgaac 76
|||||||||||||||||
Sbjct: 63 gttgtgtctcactgaac 79
>32365_mmu-mir-875:mirbase
Length = 78
Score = 95.6 bits (48), Expect = 4e-21
Identities = 67/72 (93%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 4 gtggtactatacctcagttttatcaggtgttc-ttaaaatcacctggaaatactgaggtt 62
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
Sbjct: 4 gtggtactatacctcagttttatcaggtgttcattaaaatcacctgaaaatactgaggct 63
Query: 63 gtgtctcactga 74
||| |||||||
Sbjct: 64 atgtttcactga 75
>32366_mmu-mir-875:mirbase
Length = 78
Score = 95.6 bits (48), Expect = 4e-21
Identities = 67/72 (93%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 4 gtggtactatacctcagttttatcaggtgttc-ttaaaatcacctggaaatactgaggtt 62
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
Sbjct: 4 gtggtactatacctcagttttatcaggtgttcattaaaatcacctgaaaatactgaggct 63
Query: 63 gtgtctcactga 74
||| |||||||
Sbjct: 64 atgtttcactga 75
>27463_mdo-mir-875:mirbase
Length = 75
Score = 79.8 bits (40), Expect = 2e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 4 gtggtactatacctcagttttatcaggtgttc-ttaaaatcacctggaaatactgaggtt 62
||||||| |||||||||| |||||||||||| |||||||||||||||||| ||||||||
Sbjct: 4 gtggtacaatacctcagtcttatcaggtgttaattaaaatcacctggaaatgctgaggtt 63
Query: 63 gtgtctcactga 74
| || |||||||
Sbjct: 64 gcgtttcactga 75
>33002_rno-mir-875:mirbase
Length = 73
Score = 75.8 bits (38), Expect = 4e-15
Identities = 54/58 (93%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 4 gtggtactatacctcagttttatcaggtgttc-ttaaaatcacctggaaatactgagg 60
|||||||||||||||||||||||||||||||| || |||||||||| ||| |||||||
Sbjct: 4 gtggtactatacctcagttttatcaggtgttcattcaaatcacctgaaaacactgagg 61
