miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00912;mir-877;AACZ02070205.1/12149-12234 9598:Pan troglodytes
(chimpanzee)
Length = 86
Score = 147 bits (74), Expect = 3e-35
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagactcgggggttcctgggaccctcagac 60
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 1 gtagaggagatggcgcaggggacatgggcaaagacttgggggttcctgggaccctcagac 60
Query: 61 atgtgtcctcttctccctcctcccag 86
|||||||||||||||||||||||||
Sbjct: 61 gtgtgtcctcttctccctcctcccag 86
>RF00912;mir-877;ABRO01157337.1/1763-1847 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 115 bits (58), Expect = 9e-26
Identities = 80/86 (93%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagactcgggggttcctgggaccctcagac 60
|||||||||||||||||||||||||| || ||||||| ||||| || || ||||||||||
Sbjct: 1 gtagaggagatggcgcaggggacacgagctaagactcaggggtccccgg-accctcagac 59
Query: 61 atgtgtcctcttctccctcctcccag 86
||||||||||||||||||||||||||
Sbjct: 60 atgtgtcctcttctccctcctcccag 85
>RF00912;mir-877;AAWR02009855.1/2715-2800 9796:Equus caballus
(horse)
Length = 86
Score = 99.6 bits (50), Expect = 6e-21
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagactcgggggttcctgggaccctcagac 60
||||||||||||||||| ||||||| | |||||| |||||||||||||||| ||||||
Sbjct: 1 gtagaggagatggcgcaagggacacaaacgaagacttgggggttcctgggaccttcagac 60
Query: 61 atgtgtcctcttctccctcctcccag 86
|| |||||||||||||| ||||||||
Sbjct: 61 atatgtcctcttctcccccctcccag 86
>RF00912;mir-877;ABRN01266617.1/6975-7059 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 85
Score = 93.7 bits (47), Expect = 3e-19
Identities = 80/87 (91%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagactcgggggttcctgggacc-ctcaga 59
||||||||||||||||||||||||||||| |||||| |||| |||||||||| | |||
Sbjct: 1 gtagaggagatggcgcaggggacacgggctaagact-ggggactcctgggacctcgcag- 58
Query: 60 catgtgtcctcttctccctcctcccag 86
|||||||||||||||||||||||||||
Sbjct: 59 catgtgtcctcttctccctcctcccag 85
>RF00912;mir-877;AACN010926608.1/195-110 9615:Canis lupus
familiaris (dog)
Length = 86
Score = 85.7 bits (43), Expect = 8e-17
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagactcgggggttcctgggaccctcagac 60
|||||||||||||||||||||||| |||| ||||| ||| |||||| | ||| ||||
Sbjct: 1 gtagaggagatggcgcaggggacatgggctgagacttgggagttcctagaacctctagac 60
Query: 61 atgtgtcctcttctccctcctcc 83
|||||||||||||||||||||||
Sbjct: 61 atgtgtcctcttctccctcctcc 83
>RF00912;mir-877;AB113357.1/20621-20705 9823:Sus scrofa (pig)
Length = 85
Score = 83.8 bits (42), Expect = 3e-16
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagactcgggggttcctgggaccctcagac 60
||||||||||||||||||||||||||||| |||||| |||||| |||||||| | |||
Sbjct: 1 gtagaggagatggcgcaggggacacgggccaagact-aggggttgctgggacctcccgac 59
Query: 61 atgtgtcctcttctccctcctcccag 86
|| |||||| |||||||||||||||
Sbjct: 60 ataggtcctcctctccctcctcccag 85
>RF00912;mir-877;AAIY01783760.1/194-278 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 85
Score = 83.8 bits (42), Expect = 3e-16
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagactcgggggttcctgggaccctcagac 60
||||||||||||||||||||||||||||| ||||| |||| | ||||| |||| ||
Sbjct: 1 gtagaggagatggcgcaggggacacgggcggagact-ggggctggctggggtcctccaac 59
Query: 61 atgtgtcctcttctccctcctcccag 86
||||||||||||||||||||||||||
Sbjct: 60 atgtgtcctcttctccctcctcccag 85
>RF00912;mir-877;ABRQ01006307.1/5393-5478 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 75.8 bits (38), Expect = 8e-14
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagactcgggggttcctgggaccctcagac 60
||||||||||||||||||||||||| ||| || | ||| ||||||| |||| | ||
Sbjct: 1 gtagaggagatggcgcaggggacacaggctgtaacacagggactcctggggcccttaaac 60
Query: 61 atgtgtcctcttctccctcctcccag 86
||||||||||||||||||||||||||
Sbjct: 61 atgtgtcctcttctccctcctcccag 86
>RF00912;mir-877;ABRP01070060.1/1289-1368 132908:Pteropus vampyrus
(large flying fox)
Length = 80
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagactcgggggttcctgggaccctcagac 60
|||||||||||||||||||||| |||| | |||||| ||||||||||| | | ||||||
Sbjct: 1 gtagaggagatggcgcaggggatacggactaagacttgggggttcctgcaatcttcagac 60
Query: 61 atgtgtcctc 70
|||||||||
Sbjct: 61 ctgtgtcctc 70
>RF00912;mir-877;CAAA01217351.1/14434-14518 10090:Mus musculus
(house mouse)
Length = 85
Score = 60.0 bits (30), Expect = 5e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 49 ggaccctcagacatgtgtcctcttctccctcctcccag 86
||||||| |||||||||||||||||||||||||||||
Sbjct: 48 ggacccttggacatgtgtcctcttctccctcctcccag 85
>RF00912;mir-877;ABRR01415494.1/957-1038 30538:Lama pacos (alpaca)
Length = 82
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgg 27
|||||||||||||||||||||||||||
Sbjct: 1 gtagaggagatggcgcaggggacacgg 27
