miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29023_hsa-mir-890:mirbase
Length = 77
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 ggaagtgccctacttggaaaggcatcagttgcttaaattacatgtaactattccctttct 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 ggaagtgccctacttggaaaggcatcagttgcttagattacatgtaactattccctttct 60
Query: 61 gagtagagtaa 71
|||||||||||
Sbjct: 61 gagtagagtaa 71
>30611_ptr-mir-890:mirbase
Length = 76
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 ggaagtgccctacttggaaaggcatcagttgcttaaattacatgtaactattccctttct 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 ggaagtgccctacttggaaaggcatcagttgcttagattacatgtaactattccctttct 60
Query: 61 gagtagagtaa 71
|||||||||||
Sbjct: 61 gagtagagtaa 71
>28137_mml-mir-890:mirbase
Length = 72
Score = 95.6 bits (48), Expect = 4e-21
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 6 tgccctacttggaaaggcatcagttgcttaaattacatgtaactattccctttctgagta 65
||||||||||||||||||| ||||| |||| |||||| |||||| |||||||||||||||
Sbjct: 1 tgccctacttggaaaggcaccagttacttagattacacgtaactgttccctttctgagta 60
Query: 66 gagtaaagctta 77
|||||| |||||
Sbjct: 61 gagtaaggctta 72
>30615_ptr-mir-892b:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 32 cttaaattacatgtaactattccctttctgagtagagtaa 71
|||| ||||||||| ||| || ||||||||||| ||||||
Sbjct: 31 cttagattacatgtcactgtttcctttctgagtggagtaa 70
>32922_rno-mir-465:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 54 cctttctgagtagagtaaagctta 77
|||||||||||||||||| |||||
Sbjct: 54 cctttctgagtagagtaaggctta 77
