miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01019;mir-922;AANU01297564.1/18238-18318 9544:Macaca mulatta
(rhesus monkey)
Length = 81
Score = 123 bits (62), Expect = 4e-28
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 2 tggcgttttccctctccctgtcctggactggggtcagactgtgccccgaggagaagcagc 61
||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2 tggcgttctctctctccctgtcctggactggggtcagaccgtgccccgaggagaagcagc 61
Query: 62 agagaatgggactacgtc 79
|||||||| |||||||||
Sbjct: 62 agagaatgagactacgtc 79
>RF01019;mir-922;AAWR02011835.1/10566-10486 9796:Equus caballus
(horse)
Length = 81
Score = 69.9 bits (35), Expect = 5e-12
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 7 ttttccctctccctgtcctggactggggtcagactgtgccccgaggagaagcagcagaga 66
||||| ||||||| ||||| | | |||||| ||||||||| ||||||||||||||||||
Sbjct: 7 ttttctctctccccatcctgaaatagggtcaaactgtgccctgaggagaagcagcagaga 66
Query: 67 atgggactacgtcat 81
|| ||||||| ||||
Sbjct: 67 attggactacatcat 81
>RF01019;mir-922;CU468995.15/173245-173166 9823:Sus scrofa (pig)
Length = 80
Score = 65.9 bits (33), Expect = 7e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 22 tcctggactggggtcagactgtgccccgaggagaagcagcagagaatgggact 74
||||||| | |||||||| ||||||| ||||||||||||||||||||| ||||
Sbjct: 21 tcctggaatagggtcagagtgtgccctgaggagaagcagcagagaatgagact 73
>RF01019;mir-922;ABRT010060883.1/2245-2322 9478:Tarsius syrichta
(Philippine tarsier)
Length = 78
Score = 65.9 bits (33), Expect = 7e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 21 gtcctggactggggtcagactgtgccccgaggagaagcagcagagaatgggac 73
|||||||| | |||||||||| ||||| |||||||||||||||| ||||||||
Sbjct: 21 gtcctggaatagggtcagactatgccctgaggagaagcagcagaaaatgggac 73
>RF01019;mir-922;ABVD01076297.1/5115-5196 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 82
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 33 ggtcagactgtgccccgaggagaagcagcagagaa 67
||||||||||||||| |||||||||||||||||||
Sbjct: 34 ggtcagactgtgccctgaggagaagcagcagagaa 68
>RF01019;mir-922;AAGV020523561.1/2930-3011 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 82
Score = 54.0 bits (27), Expect = 3e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 22 tcctggactggggtcagactgtgccccgaggagaagcagcagagaatgggactac 76
||||||| | ||||||||||| |||| |||||||| || |||||||| |||||||
Sbjct: 23 tcctggaatagggtcagactgagccctgaggagaaacaccagagaataggactac 77
>RF01019;mir-922;AAWR02040319.1/15110-15197 9796:Equus caballus
(horse)
Length = 88
Score = 54.0 bits (27), Expect = 3e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 1 atggcgttttccctctccctgtcctggactggggtcagactgtgccc 47
||||||||||| ||||||| |||||||| | |||||||||||||||
Sbjct: 1 atggcgttttctctctcccagtcctggaataaggtcagactgtgccc 47
>RF01019;mir-922;AAGW01349394.1/226-303 9986:Oryctolagus cuniculus
(rabbit)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 48/54 (88%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 23 cctggactggggtcagactgtgccccgaggagaagcagcagagaatgggactac 76
|||||| | ||||||||||| ||| |||||||||||||||||| |||||||||
Sbjct: 22 cctggaatagggtcagactg--ccctgaggagaagcagcagagactgggactac 73
>RF01019;mir-922;ABRQ01469233.1/3061-3143 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 22 tcctggactggggtcagactgtgccccgaggagaa 56
||||||||| |||||||||||||||| ||||||||
Sbjct: 24 tcctggactagggtcagactgtgccctgaggagaa 58
>RF01019;mir-922;ABDC01218976.1/123-206 30608:Microcebus murinus
(gray mouse lemur)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 gaggagaagcagcagagaatgggact 74
||||||||||||||||||||||||||
Sbjct: 52 gaggagaagcagcagagaatgggact 77
>RF01019;mir-922;AAEX02008227.1/36699-36626 9615:Canis lupus
familiaris (dog)
Length = 74
Score = 50.1 bits (25), Expect = 4e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 13 ctctccctgtcctggactggggtcagactgtgccccgaggagaag 57
||||| |||||||||| | | |||||||||||||| |||||||||
Sbjct: 11 ctctctctgtcctggaatagagtcagactgtgccctgaggagaag 55
>RF01019;mir-922;AAGU02493818.1/127-48 9785:Loxodonta africana
(African savanna elephant)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 22 tcctggactggggtcagactgtgccccgaggagaa 56
||||||| | |||||||||||||||| ||||||||
Sbjct: 24 tcctggaatagggtcagactgtgccctgaggagaa 58
>RF01019;mir-922;AAFC03007273.1/63604-63529 9913:Bos taurus
(cattle)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 gaggagaagcagcagagaatgggact 74
||||||||||| ||||||||||||||
Sbjct: 44 gaggagaagcatcagagaatgggact 69
>RF01019;mir-922;AAYZ01250604.1/2148-2070 9978:Ochotona princeps
(American pika)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 ccccgaggagaagcagcagagaatgg 70
|||| |||||||||||||||||||||
Sbjct: 44 ccccaaggagaagcagcagagaatgg 69
