miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00981;mir-939;AANU01106867.1/8590-8508 9544:Macaca mulatta
(rhesus monkey)
Length = 83
Score = 95.6 bits (48), Expect = 8e-20
Identities = 64/68 (94%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 12 ctggggagctgaggctctgggagtggccggagctga-ctctgggcctctgctccccagtg 70
||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||
Sbjct: 14 ctggggagctgaggctctgggggtggccggggctgacccctgggcctctgctccccagtg 73
Query: 71 tctgaccg 78
||||||||
Sbjct: 74 tctgaccg 81
>RF00981;mir-939;AAQQ01061036.1/748-664 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 85
Score = 61.9 bits (31), Expect = 1e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 28 ctgggagtggccggagctgactctgggcctctgctccccagtgtctgaccg 78
||||| ||||| ||||||||||||||| || ||||||| ||||||||||||
Sbjct: 33 ctgggggtggctggagctgactctgggtctttgctccctagtgtctgaccg 83
>RF00981;mir-939;ABDC01190223.1/9073-8992 30608:Microcebus murinus
(gray mouse lemur)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 50 ctgggcctctgctccccagtgtctga 75
||||||||||||||| ||||||||||
Sbjct: 52 ctgggcctctgctcctcagtgtctga 77
