miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29048_hsa-mir-1179:mirbase
Length = 91
Score = 172 bits (87), Expect = 3e-44
Identities = 90/91 (98%)
Strand = Plus / Plus
Query: 1 ggctggaaaggaagaagcattctttcattggctggtgtgtattgccttgtcaaccaataa 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 ggctggaaaggaagaagcattctttcattggttggtgtgtattgccttgtcaaccaataa 60
Query: 61 gaggatgccatttatccttttctgactagct 91
|||||||||||||||||||||||||||||||
Sbjct: 61 gaggatgccatttatccttttctgactagct 91
>30631_ptr-mir-1179:mirbase
Length = 90
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 2 gctggaaaggaagaagcattctttcattggctggtgtgtattgccttgtcaaccaataag 61
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 gctggaaaggaagaagcattctttcattggttggtgtgtattgccttgtcaaccaataag 60
Query: 62 aggatgccatttatccttttctgactagct 91
||||||||||||||||||||||||||||||
Sbjct: 61 aggatgccatttatccttttctgactagct 90
>27281_eca-mir-1179:mirbase
Length = 86
Score = 131 bits (66), Expect = 9e-32
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 6 gaaaggaagaagcattctttcattggctggtgtgtattgccttgtcaaccaataagagga 65
|||||| ||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||
Sbjct: 1 gaaagggagaagcattctttcattggttggtgtgtattgcctcgtcagccaatcagagga 60
Query: 66 tgccatttatccttttctgactagct 91
||||||||||||||||||||||||||
Sbjct: 61 tgccatttatccttttctgactagct 86
>33467_bta-mir-1179:mirbase
Length = 90
Score = 121 bits (61), Expect = 9e-29
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 10 ggaagaagcattctttcattggctggtgtgtattgccttgtcaaccaataagaggatgcc 69
|||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||
Sbjct: 10 ggaagaagcattctttcattggttggtgtatgttgccttgtcaaccaatcagaggatgcc 69
Query: 70 atttatccttttctgactagc 90
|||||||||||||| ||||||
Sbjct: 70 atttatccttttctaactagc 90
