miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AADC01118575.1/87087-87166 9606:Homo sapiens
(human)
Length = 80
Score = 143 bits (72), Expect = 4e-34
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 4 ggtacttgaagagaggataccctttgtatgttcacttgattaatggcgaatatacagggg 63
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacttaaagagaggataccctttgtatgttcacttgattaatggcgaatatacagggg 60
Query: 64 gagactcttatttgcgtatc 83
|||||||| |||||||||||
Sbjct: 61 gagactctcatttgcgtatc 80
>RF00641;mir-154;AAGU02890007.1/573-652 9785:Loxodonta africana
(African savanna elephant)
Length = 80
Score = 111 bits (56), Expect = 1e-24
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 4 ggtacttgaagagaggataccctttgtatgttcacttgattaatggcgaatatacagggg 63
|||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||
Sbjct: 1 ggtacttgaagagaggataccctttgtatgttcactctattcatgatgaatatacagggg 60
Query: 64 gagactcttatttgcgtatc 83
|||||||||||||| |||||
Sbjct: 61 gagactcttatttgtgtatc 80
>RF00641;mir-154;AAPE01089254.1/570-648 59463:Myotis lucifugus
(little brown bat)
Length = 79
Score = 103 bits (52), Expect = 4e-22
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 ggtacttgaagagaggataccctttgtatgttcacttgattaatggcgaatatacagggg 63
|||||||||| |||| ||||||||||||||||||||| |||||||| |||| |||| |||
Sbjct: 1 ggtacttgaaaagagaataccctttgtatgttcactttattaatggtgaatgtaca-ggg 59
Query: 64 gagactcttatttgcgtatc 83
||||||||||||||||||||
Sbjct: 60 gagactcttatttgcgtatc 79
>RF00641;mir-154;AAGV020362613.1/432-509 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 78
Score = 71.9 bits (36), Expect = 1e-12
Identities = 71/80 (88%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 4 ggtacttgaagagaggataccctttgtatgttcacttgattaatggcgaatatacagggg 63
|||||||||||||||||||||| |||| |||||| |||||| | |||||||| ||||
Sbjct: 1 ggtacttgaagagaggataccccttgtgtgttcatgctattaat-gtgaatatac-gggg 58
Query: 64 gagactcttatttgcgtatc 83
||||||||||||||||||||
Sbjct: 59 gagactcttatttgcgtatc 78
>RF00641;mir-154;ABDC01257673.1/11708-11785 30608:Microcebus
murinus (gray mouse lemur)
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 11 gaagagaggataccctttgtatgttcacttgattaatggcgaatatacagggg 63
|||||||||| |||||||||||| || || |||||||||||||| |||||||
Sbjct: 8 gaagagaggacaccctttgtatgctctctctattaatggcgaatacacagggg 60
