miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAGW01360474.1/6624-6703 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 135 bits (68), Expect = 1e-31
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 8 ggtatttgaagatgcggttgaccatggtgtgtacgctttatttatgacgtaggacacatg 67
||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 1 ggtatctgaagatgcggttgaccatggtgtgtacgctttatctgtgacgtaggacacatg 60
Query: 68 gtctacttcttctcaatatc 87
||||||||||||||||||||
Sbjct: 61 gtctacttcttctcaatatc 80
>RF00641;mir-154;AAGU02503119.1/624-702 9785:Loxodonta africana
(African savanna elephant)
Length = 79
Score = 109 bits (55), Expect = 6e-24
Identities = 68/71 (95%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 17 agatgcggttgaccatggtgtgtacgctttatttatgacgtaggacacatggtctacttc 76
||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 10 agatgcggtcgaccatg-tgtgtacgctttatttacgacgtaggacacatggtctacttc 68
Query: 77 ttctcaatatc 87
|||||||||||
Sbjct: 69 ttctcaatatc 79
>RF00641;mir-154;ABRR01339481.1/284-363 30538:Lama pacos (alpaca)
Length = 80
Score = 99.6 bits (50), Expect = 6e-21
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 18 gatgcggttgaccatggtgtgtacgctttatttatgacgtaggacacatggtctacttct 77
|||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 11 gatgcggtcgaccatggtgtgcacgctttatttgcgacgtaggacacatggtctacttct 70
Query: 78 tctcaatatc 87
|||| |||||
Sbjct: 71 tctcgatatc 80
