miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF02023;mir-1208;AANU01107820.1/3290-3362 9544:Macaca mulatta
(rhesus monkey)
Length = 73
Score = 127 bits (64), Expect = 2e-29
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 1 caccggcagaatcactgttcagacaggcggagacgggtctttctcgccatctgatgagtc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 caccggcagaatcactgttcagacaggcggagacgggtctttcttgccatctgatgagtc 60
Query: 61 accactgtggtg 72
| ||||||||||
Sbjct: 61 atcactgtggtg 72
>RF02023;mir-1208;ABDC01076655.1/1614-1685 30608:Microcebus
murinus (gray mouse lemur)
Length = 72
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 9 gaatcactgttcagacaggcggagacgggtctttctcgccatctgatgagtcaccactgt 68
|||||||||| ||||||||| ||||||||||||||| ||| |||||||| ||| | ||||
Sbjct: 8 gaatcactgtgcagacaggctgagacgggtctttcttgccctctgatgaatcagcgctgt 67
Query: 69 gg 70
||
Sbjct: 68 gg 69
>RF02023;mir-1208;AAWR02021560.1/209322-209395 9796:Equus caballus
(horse)
Length = 74
Score = 65.9 bits (33), Expect = 6e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 5 ggcagaatcactgttcagacaggcggagacgggtctttctcgccatctgatgagtca 61
|||||||||||||||||||||||| ||||| |||| || | |||||||||||||||
Sbjct: 5 ggcagaatcactgttcagacaggctgagacaggtcctttccaccatctgatgagtca 61
>RF02023;mir-1208;ABRR01052556.1/1405-1478 30538:Lama pacos
(alpaca)
Length = 74
Score = 60.0 bits (30), Expect = 4e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 5 ggcagaatcactgttcagacaggcggagacgggtctttctcgccatctgatgagtcacca 64
|||||||||||||| ||||||||| ||||| || | ||||| ||||||| ||||||| |
Sbjct: 5 ggcagaatcactgtgcagacaggctgagacaggcccttctcaccatctggtgagtcatga 64
Query: 65 ctgtgg 70
||||||
Sbjct: 65 ctgtgg 70
>RF02023;mir-1208;AAQR01056094.1/200-271 30611:Otolemur garnettii
(small-eared galago)
Length = 72
Score = 50.1 bits (25), Expect = 4e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 9 gaatcactgttcagacaggcggagacgggtctttctcgccatctgatgagtcaccactgt 68
|||||||||| |||| ||| ||||| |||| |||| ||||||||||| ||||||||||
Sbjct: 8 gaatcactgtgcagatgggctgagacaggtccctctcaccatctgatgaatcaccactgt 67
Query: 69 g 69
|
Sbjct: 68 g 68
>RF02023;mir-1208;AAQQ01553964.1/228-300 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 73
Score = 50.1 bits (25), Expect = 4e-06
Identities = 47/53 (88%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 10 aatcactgttcagacaggcggagacgggtctttctcgccatctgatgagtcac 62
||||||||||| ||||||| ||||| |||| ||| |||||||||||||||||
Sbjct: 11 aatcactgttccgacaggctgagacaggtc-ctctggccatctgatgagtcac 62
>RF02023;mir-1208;ABRP01127598.1/2762-2836 132908:Pteropus
vampyrus (large flying fox)
Length = 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 55/65 (84%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 6 gcagaatcactgttcagacaggcggagacgggtctttctcgccatctgatgagtcaccac 65
||||||| ||||||||||||||| ||| | |||| ||| ||||||||||||||| ||
Sbjct: 6 gcagaattactgttcagacaggctgaggcaggtc---ctcaccatctgatgagtcatgac 62
Query: 66 tgtgg 70
|||||
Sbjct: 63 tgtgg 67
>RF02023;mir-1208;ABRO01054249.1/664-736 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 73
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 5 ggcagaatcactgttcagacaggcggagac 34
||||||| |||||||||||||||| |||||
Sbjct: 5 ggcagaaccactgttcagacaggctgagac 34
