miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00942;mir-1224;CABD01015108.1/8228-8312 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 85
Score = 153 bits (77), Expect = 4e-37
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggcgccgccggggccgggcgctgtctcagctcgctt 60
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggtgccgccggggccgggcgctgtttcagctcgctt 60
Query: 61 ctccccccacctcctctctcctcag 85
|||||||||||||||||||||||||
Sbjct: 61 ctccccccacctcctctctcctcag 85
>RF00942;mir-1224;ABDC01030158.1/9889-9974 30608:Microcebus
murinus (gray mouse lemur)
Length = 86
Score = 107 bits (54), Expect = 2e-23
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggcgccgccggggccggg-cgctgtctcagctcgct 59
||||||||||||||||||||||||||| || | ||||| || |||||||| ||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggcatcgtcagggcctggacgctgtcttagctcgct 60
Query: 60 tctccccccacctcctctctcctcag 85
||||||||||||||||||||||||||
Sbjct: 61 tctccccccacctcctctctcctcag 86
>RF00942;mir-1224;AAPY01267440.1/1166-1249 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 97.6 bits (49), Expect = 2e-20
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggcgccgccggggccgggcgctgtctcagctcgctt 60
||||||||||||||||||||||| |||| |||| ||||||||||| |||||||| ||| |
Sbjct: 1 gtgaggactcgggaggtggagggcggcgtcgccagggccgggcgccgtctcagcccgc-t 59
Query: 61 ctccccccacctcctctctcctcag 85
| ||||||||||||||||||||||
Sbjct: 60 cgtcccccacctcctctctcctcag 84
>RF00942;mir-1224;ABRO01220388.1/4019-4105 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 87
Score = 93.7 bits (47), Expect = 3e-19
Identities = 79/87 (90%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggcgccgccggggcc-gggcgctgtctcagctcgct 59
|||||||||||||||||||||||||||| ||| ||||| ||| || ||||||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggcgttgccagggccagggtgccatctcagctcgct 60
Query: 60 tct-ccccccacctcctctctcctcag 85
||| |||||||||||||||||||||||
Sbjct: 61 tctcccccccacctcctctctcctcag 87
>RF00942;mir-1224;AAGV020421475.1/1984-2069 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 86
Score = 91.7 bits (46), Expect = 1e-18
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggcgccgccggggccgggcgctgtctcagctcgctt 60
||||||||||||||||||||||||||| | |||||||||| |||||||| ||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggcctcttgagggccgggcgttgtctcagttcgctt 60
Query: 61 ct-ccccccacctcctctctcctcag 85
|| |||||||||||||||||||||||
Sbjct: 61 cttccccccacctcctctctcctcag 86
>RF00942;mir-1224;ABRQ01131005.1/1760-1845 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 91.7 bits (46), Expect = 1e-18
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggcgccgccggggcc-gggcgctgtctcagctcgct 59
|||||||||||||||||||||||||| | | || ||||| |||| | |||||||| ||||
Sbjct: 1 gtgaggactcgggaggtggagggtggtgtcaccagggccagggcacagtctcagcgcgct 60
Query: 60 tctccccccacctcctctctcctcag 85
|||||||||||||||||||||||||
Sbjct: 61 cctccccccacctcctctctcctcag 86
>RF00942;mir-1224;AAYZ01168547.1/11688-11773 9978:Ochotona
princeps (American pika)
Length = 86
Score = 83.8 bits (42), Expect = 3e-16
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggcgccgccggggccgggc-gctgtctcagctcgct 59
|||||||||||||||||||||||| | ||| | |||||| ||||||||| ||||||
Sbjct: 1 gtgaggactcgggaggtggagggtatcattgccagagccgggatgctgtctcaactcgct 60
Query: 60 tctccccccacctcctctctcctcag 85
||||||||||||||||||||||||||
Sbjct: 61 tctccccccacctcctctctcctcag 86
>RF00942;mir-1224;AAQQ01259737.1/1179-1264 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 86
Score = 71.9 bits (36), Expect = 1e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 46 tgtctcagctcgcttctccccccacctcctctctcctcag 85
||||||||||| ||||||||||||||||||||||||||||
Sbjct: 47 tgtctcagctcacttctccccccacctcctctctcctcag 86
>RF00942;mir-1224;AAIY01561587.1/204-118 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 71.9 bits (36), Expect = 1e-12
Identities = 75/87 (86%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggcgccgccggggc--cgggcgctgtctcagctcgc 58
||||||||| ||||||||||||| |||| ||||| | ||||||| ||||||||||||
Sbjct: 1 gtgaggacttgggaggtggagggcggcgtggccggcccggcgggcgccgtctcagctcgc 60
Query: 59 ttctccccccacctcctctctcctcag 85
| |||||||||||||||||||||||
Sbjct: 61 cgcgccccccacctcctctctcctcag 87
>RF00942;mir-1224;BC125016.1/1418-1502 10090:Mus musculus (house
mouse)
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 45 ctgtctcagctcgcttctccccccacctcctctctcctcag 85
|||||||||||| || ||||||||||||| |||||||||||
Sbjct: 46 ctgtctcagctccct-ctccccccacctcttctctcctcag 85
>RF00942;mir-1224;AAKN02012305.1/10525-10613 10141:Cavia porcellus
(domestic guinea pig)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 62 tccccccacctcctctctcctcag 85
||||||||||||||||||||||||
Sbjct: 66 tccccccacctcctctctcctcag 89
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggaggg 23
|||||||||||||||||||||||
Sbjct: 1 gtgaggactcgggaggtggaggg 23
