miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31293_ppy-mir-1224:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggcgccgccggggccgggcgctgtctcagctcgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggcgccgccggggccgggcgctgtctcagctcgctt 60
Query: 61 ctccccccacctcctctctcctcag 85
|||||||||||||||||||||||||
Sbjct: 61 ctccccccacctcctctctcctcag 85
>28153_mml-mir-1224:mirbase
Length = 85
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggcgccgccggggccgggcgctgtctcagctcgctt 60
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggcgccgccggggccaggcgctgtctaagctcgctt 60
Query: 61 ctccccccacctcctctctcctcag 85
|||||||||||||||||||||||||
Sbjct: 61 ctccccccacctcctctctcctcag 85
>29069_hsa-mir-1224:mirbase
Length = 85
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggcgccgccggggccgggcgctgtctcagctcgctt 60
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggtgccgccggggccgggcgctgtttcagctcgctt 60
Query: 61 ctccccccacctcctctctcctcag 85
|||||||||||||||||||||||||
Sbjct: 61 ctccccccacctcctctctcctcag 85
>29070_hsa-mir-1224:mirbase
Length = 85
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggcgccgccggggccgggcgctgtctcagctcgctt 60
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggtgccgccggggccgggcgctgtttcagctcgctt 60
Query: 61 ctccccccacctcctctctcctcag 85
|||||||||||||||||||||||||
Sbjct: 61 ctccccccacctcctctctcctcag 85
>30646_ptr-mir-1224:mirbase
Length = 85
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggcgccgccggggccgggcgctgtctcagctcgctt 60
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggtgccgccggggccgggcgctgtttcagctcgctt 60
Query: 61 ctccccccacctcctctctcctcag 85
|||||||||||||||||||||||||
Sbjct: 61 ctccccccacctcctctctcctcag 85
>30647_ptr-mir-1224:mirbase
Length = 85
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggcgccgccggggccgggcgctgtctcagctcgctt 60
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggtgccgccggggccgggcgctgtttcagctcgctt 60
Query: 61 ctccccccacctcctctctcctcag 85
|||||||||||||||||||||||||
Sbjct: 61 ctccccccacctcctctctcctcag 85
>33471_bta-mir-1224:mirbase
Length = 86
Score = 131 bits (66), Expect = 9e-32
Identities = 82/86 (95%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggcgccgccggggcc-gggcgctgtctcagctcgct 59
||||||||||||||||||||||||||||| ||| ||||| |||| |||||||||||||||
Sbjct: 1 gtgaggactcgggaggtggagggtggcgctgccagggccagggcactgtctcagctcgct 60
Query: 60 tctccccccacctcctctctcctcag 85
||||||||||||||||||||||||||
Sbjct: 61 tctccccccacctcctctctcctcag 86
>34140_ssc-mir-1224:mirbase
Length = 108
Score = 123 bits (62), Expect = 2e-29
Identities = 81/86 (94%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggtggcgccgccggggcc-gggcgctgtctcagctcgct 59
||||||||||||||||||||||||||||| ||| | ||| |||| |||||||||||||||
Sbjct: 11 gtgaggactcgggaggtggagggtggcgctgccagagccagggcactgtctcagctcgct 70
Query: 60 tctccccccacctcctctctcctcag 85
||||||||||||||||||||||||||
Sbjct: 71 tctccccccacctcctctctcctcag 96
>32396_mmu-mir-1224:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 45 ctgtctcagctcgcttctccccccacctcctctctcctcag 85
|||||||||||| || ||||||||||||| |||||||||||
Sbjct: 46 ctgtctcagctccct-ctccccccacctcttctctcctcag 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggt 24
||||||||| ||||||||||||||
Sbjct: 1 gtgaggactggggaggtggagggt 24
>33015_rno-mir-1224:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 45 ctgtctcagctcgcttctccccccacctcctctctcctcag 85
|||||||||||| || ||||||||||||| |||||||||||
Sbjct: 46 ctgtctcagctccct-ctccccccacctcttctctcctcag 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gtgaggactcgggaggtggagggt 24
||||||||| ||||||||||||||
Sbjct: 1 gtgaggactggggaggtggagggt 24
