miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29078_hsa-mir-1233-1:mirbase
Length = 82
Score = 139 bits (70), Expect = 3e-34
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 1 gtgagtgggagaccagggcacggcagggggagctgcagggctgtgggaggggccccagcg 60
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gtgagtgggaggccagggcacggcagggggagctgcagggctatgggaggggccccagcg 60
Query: 61 tctgagccctttcctcccgcag 82
|||||||||| |||||||||||
Sbjct: 61 tctgagccctgtcctcccgcag 82
>29079_hsa-mir-1233-2:mirbase
Length = 82
Score = 139 bits (70), Expect = 3e-34
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 1 gtgagtgggagaccagggcacggcagggggagctgcagggctgtgggaggggccccagcg 60
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gtgagtgggaggccagggcacggcagggggagctgcagggctatgggaggggccccagcg 60
Query: 61 tctgagccctttcctcccgcag 82
|||||||||| |||||||||||
Sbjct: 61 tctgagccctgtcctcccgcag 82
>30652_ptr-mir-1233-2:mirbase
Length = 83
Score = 123 bits (62), Expect = 2e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 1 gtgagtgggagaccagggcacggcagggggagctgcagggctgtgggaggggccccagcg 60
||||||||||| |||| |||||||||||||||||||||||| || |||||||||||||||
Sbjct: 1 gtgagtgggaggccagtgcacggcagggggagctgcagggccgtcggaggggccccagcg 60
Query: 61 tctgagccctttcctcccgcag 82
|||||||||| |||||||||||
Sbjct: 61 tctgagccctgtcctcccgcag 82
>28160_mml-mir-1233:mirbase
Length = 82
Score = 115 bits (58), Expect = 5e-27
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 1 gtgagtgggagaccagggcacggcagggggagctgcagggctgtgggaggggccccagcg 60
||||||||||| |||||||| |||||||||||||||||||| | |||||||||||||||
Sbjct: 1 gtgagtgggaggccagggcagggcagggggagctgcagggccttcggaggggccccagcg 60
Query: 61 tctgagccctttcctcccgcag 82
|||||||||| |||||||||||
Sbjct: 61 tctgagccctgtcctcccgcag 82
>30651_ptr-mir-1233-1:mirbase
Length = 83
Score = 115 bits (58), Expect = 5e-27
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 1 gtgagtgggagaccagggcacggcagggggagctgcagggctgtgggaggggccccagcg 60
||||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct: 1 gtgagtgggaggccagggcatggcagggggagctgcagggccgtcggaggggccccagca 60
Query: 61 tctgagccctttcctcccgcag 82
|||||||||| |||||||||||
Sbjct: 61 tctgagccctgtcctcccgcag 82
>30653_ptr-mir-1233-3:mirbase
Length = 80
Score = 105 bits (53), Expect = 5e-24
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 18 gcacggcagggggagctgcagggctgtgggaggggccccagcgtctgagccctttcctcc 77
|||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct: 16 gcacggcagggggagctgcagggccgtcggaggggccccagcgtctgagccctgtcctcc 75
Query: 78 cgcag 82
|||||
Sbjct: 76 cgcag 80
