miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29088_hsa-mir-1245:mirbase
Length = 70
Score = 109 bits (55), Expect = 3e-25
Identities = 68/71 (95%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 atttatgtataggcctttagatccatctgaggttgaatactctttaagtgatctaaaggc 60
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 1 atttatgtataggcctttagatc-atctgatgttgaatactctttaagtgatctaaaggc 59
Query: 61 ctacacataaa 71
||||| |||||
Sbjct: 60 ctacatataaa 70
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 49 tgatctaaaggcctacacataaa 71
||||||||||||||| |||||||
Sbjct: 24 tgatctaaaggcctatacataaa 2
>29089_hsa-mir-1245b:mirbase
Length = 69
Score = 107 bits (54), Expect = 1e-24
Identities = 67/70 (95%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 2 tttatgtataggcctttagatccatctgaggttgaatactctttaagtgatctaaaggcc 61
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 69 tttatgtataggcctttagatc-atctgatgttgaatactctttaagtgatctaaaggcc 11
Query: 62 tacacataaa 71
|||| |||||
Sbjct: 10 tacatataaa 1
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 tgatctaaaggcctacacataaa 71
||||||||||||||| |||||||
Sbjct: 47 tgatctaaaggcctatacataaa 69
>29090_hsa-mir-1245b:mirbase
Length = 69
Score = 107 bits (54), Expect = 1e-24
Identities = 67/70 (95%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 2 tttatgtataggcctttagatccatctgaggttgaatactctttaagtgatctaaaggcc 61
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 69 tttatgtataggcctttagatc-atctgatgttgaatactctttaagtgatctaaaggcc 11
Query: 62 tacacataaa 71
|||| |||||
Sbjct: 10 tacatataaa 1
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 tgatctaaaggcctacacataaa 71
||||||||||||||| |||||||
Sbjct: 47 tgatctaaaggcctatacataaa 69
>30668_ptr-mir-1245:mirbase
Length = 69
Score = 99.6 bits (50), Expect = 2e-22
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 2 tttatgtataggcctttagatccatctgaggttgaatactctttaagtgatctaaaggcc 61
|||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 1 tttatgtataagcctttagatc-atctgatgttgaatactctttaagtgatctaaaggcc 59
Query: 62 tacacataaa 71
|||| |||||
Sbjct: 60 tacatataaa 69
