miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29093_hsa-mir-1248:mirbase
Length = 106
Score = 210 bits (106), Expect = 2e-55
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 1 tttaccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttaccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggttt 60
Query: 61 ttgcaataatgctagcagagtacacacaagaagaaaagtaacagca 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgcaataatgctagcagagtacacacaagaagaaaagtaacagca 106
>30671_ptr-mir-1248:mirbase
Length = 105
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 2 ttaccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttt 60
Query: 62 tgcaataatgctagcagagtacacacaagaagaaaagtaacagca 106
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgcaataatgctagcagagtacacacaagaagaaaagtaacagca 105
>27288_eca-mir-1248:mirbase
Length = 93
Score = 143 bits (72), Expect = 3e-35
Identities = 87/92 (94%)
Strand = Plus / Plus
Query: 5 ccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttttgc 64
|||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct: 2 ccttcttgtataagcactgtgctaaaattgcagaaactaggatcacttcttggtttttgt 61
Query: 65 aataatgctagcagagtacacacaagaagaaa 96
||||||||||||||||||||||||||||||||
Sbjct: 62 aataatgctagcagagtacacacaagaagaaa 93
>33473_bta-mir-1248-1:mirbase
Length = 105
Score = 81.8 bits (41), Expect = 9e-17
Identities = 84/96 (87%), Gaps = 3/96 (3%)
Strand = Plus / Plus
Query: 1 tttaccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggttt 60
||||||||||||||||||||||||||||||||| |||| || | || | ||||||||
Sbjct: 1 tttaccttcttgtataagcactgtgctaaaattacagaaaccaaga--tagccttggttt 58
Query: 61 ttgcaataatgctagcagagta-cacacaagaagaa 95
||| |||||||||||||||||| ||||||||||||
Sbjct: 59 ttgtaataatgctagcagagtattacacaagaagaa 94
>33474_bta-mir-1248-2:mirbase
Length = 105
Score = 77.8 bits (39), Expect = 1e-15
Identities = 82/94 (87%), Gaps = 3/94 (3%)
Strand = Plus / Plus
Query: 3 taccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggttttt 62
||||||||||||||||||||||||||||||| |||| || | || | ||||||||||
Sbjct: 3 taccttcttgtataagcactgtgctaaaattacagaaaccaaga--tagccttggttttt 60
Query: 63 gcaataatgctagcagagta-cacacaagaagaa 95
| |||||||||||||||||| ||||||||||||
Sbjct: 61 gtaataatgctagcagagtattacacaagaagaa 94
