miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29098_hsa-mir-1253:mirbase
Length = 105
Score = 168 bits (85), Expect = 5e-43
Identities = 100/105 (95%)
Strand = Plus / Plus
Query: 1 agcagcaagaggtaaaatccaaaagaggagaagatcagcctgcagatgtggactgctaaa 60
||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 agcagcaagagatagaatccaaaagagaagaagatcagcctgcagatgtggactgctaaa 60
Query: 61 tgcaggctgatcttctcctctttgggattctcttatgagaggcca 105
|||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 61 tgcaggctgatcttctcccctttgggattctcttatgagaagcca 105
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 61 tgcaggctgatcttctcctctttgggattct 91
|||||||||||||||| |||||| |||||||
Sbjct: 44 tgcaggctgatcttcttctcttttggattct 14
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 16 aatccaaaagaggagaagatcagcctgca 44
||||| |||| ||||||||||||||||||
Sbjct: 89 aatcccaaaggggagaagatcagcctgca 61
>30675_ptr-mir-1253:mirbase
Length = 104
Score = 167 bits (84), Expect = 2e-42
Identities = 96/100 (96%)
Strand = Plus / Plus
Query: 1 agcagcaagaggtaaaatccaaaagaggagaagatcagcctgcagatgtggactgctaaa 60
||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 agcagcaagagatagaatccaaaagagaagaagatcagcctgcagatgtggactgctaaa 60
Query: 61 tgcaggctgatcttctcctctttgggattctcttatgaga 100
|||||||||||||||||| |||||||||||||||||||||
Sbjct: 61 tgcaggctgatcttctcccctttgggattctcttatgaga 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 61 tgcaggctgatcttctcctctttgggattct 91
|||||||||||||||| |||||| |||||||
Sbjct: 44 tgcaggctgatcttcttctcttttggattct 14
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 16 aatccaaaagaggagaagatcagcctgca 44
||||| |||| ||||||||||||||||||
Sbjct: 89 aatcccaaaggggagaagatcagcctgca 61
