miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29099_hsa-mir-1254:mirbase
Length = 97
Score = 176 bits (89), Expect = 2e-45
Identities = 95/97 (97%)
Strand = Plus / Plus
Query: 1 ggtgggaggattgcttgagtctggaagctggagcctgcagtgaactatcattgtgccact 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgggaggattgcttgagcctggaagctggagcctgcagtgaactatcattgtgccact 60
Query: 61 gcactccagcctaggcaacaaaatgaaatcctgtcta 97
| |||||||||||||||||||||||||||||||||||
Sbjct: 61 gtactccagcctaggcaacaaaatgaaatcctgtcta 97
>30676_ptr-mir-1254:mirbase
Length = 96
Score = 167 bits (84), Expect = 2e-42
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 2 gtgggaggattgcttgagtctggaagctggagcctgcagtgaactatcattgtgccactg 61
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgggaggattgcttgagcctggaagctggagcctgcagtgaactatcattgtgccactg 60
Query: 62 cactccagcctaggcaacaaaatgaaatcctgtcta 97
| |||||||||||||||||||||||||||||||||
Sbjct: 61 tattccagcctaggcaacaaaatgaaatcctgtcta 96
>29100_hsa-mir-1254-2:mirbase
Length = 63
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 16 tgagtctggaagctggagcctgcagtgaactat 48
|||| ||||||||||||||||||||||| ||||
Sbjct: 2 tgagcctggaagctggagcctgcagtgagctat 34
>29128_hsa-mir-1273f:mirbase
Length = 99
Score = 46.1 bits (23), Expect = 5e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1 ggtgggaggattgcttgagtctggaagctggagcctgcagtga 43
||||||||||||||||||| |||| || ||||| ||||||||
Sbjct: 2 ggtgggaggattgcttgagcctgggagatggaggttgcagtga 44
>29124_hsa-mir-1273:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 50 attgtgccactgcactccagcctaggcaacaaa 82
|||| |||||||||||||||||| ||| |||||
Sbjct: 53 attgcgccactgcactccagcctgggcgacaaa 85
>29129_hsa-mir-1273g:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ggtgggaggattgcttgagtc 21
|||||||||||||||||||||
Sbjct: 3 ggtgggaggattgcttgagtc 23
>30688_ptr-mir-1273:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 50 attgtgccactgcactccagcctaggcaacaaa 82
|||| |||||||||||||||||| ||| |||||
Sbjct: 53 attgcgccactgcactccagcctgggcgacaaa 85
