miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29103_hsa-mir-1255b-2:mirbase
Length = 67
Score = 125 bits (63), Expect = 4e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 1 tcttacggatgagcaaagaaagtggtttgcgcctcaagaagccactttctttgctcatcc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tcttacggatgagcaaagaaagtggtttgcgcctcaagaaaccactttctttgctcatcc 60
Query: 61 ataagga 67
|||||||
Sbjct: 61 ataagga 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 2 cttacggatgagcaaagaaagtggttt 28
|||| ||||||||||||||||||||||
Sbjct: 65 cttatggatgagcaaagaaagtggttt 39
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 42 ccactttctttgctcatccataag 65
||||||||||||||||||| ||||
Sbjct: 25 ccactttctttgctcatccgtaag 2
>30677_ptr-mir-1255b:mirbase
Length = 66
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 2 cttacggatgagcaaagaaagtggtttgcgcctcaagaagccactttctttgctcatcca 61
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 cttacggatgagcaaagaaagtggtttgcgcctcaagaaaccactttctttgctcatcca 60
Query: 62 taagga 67
||||||
Sbjct: 61 taagga 66
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 2 cttacggatgagcaaagaaagtggttt 28
|||| ||||||||||||||||||||||
Sbjct: 64 cttatggatgagcaaagaaagtggttt 38
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 42 ccactttctttgctcatccataag 65
||||||||||||||||||| ||||
Sbjct: 24 ccactttctttgctcatccgtaag 1
>29102_hsa-mir-1255b-1:mirbase
Length = 63
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 4 tacggatgagcaaagaaagtggttt 28
|||||||||||||||||||||||||
Sbjct: 1 tacggatgagcaaagaaagtggttt 25
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 36 aagaagccactttctttgctcatcc 60
||||| |||||||||||||||||||
Sbjct: 28 aagaaaccactttctttgctcatcc 4
>31316_ppy-mir-1255b-1:mirbase
Length = 60
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 35 caagaagccactttctttgctcatcc 60
|||||| |||||||||||||||||||
Sbjct: 26 caagaaaccactttctttgctcatcc 1
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 ggatgagcaaagaaagtggttt 28
||||||||||||||||||||||
Sbjct: 1 ggatgagcaaagaaagtggttt 22
>27289_eca-mir-1255b:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 4 tacggatgagcaaagaaagtggttt 28
||||||| |||||||||||||||||
Sbjct: 1 tacggataagcaaagaaagtggttt 25
