miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41245_csi-MIR398:mirbase
Length = 225
Score = 339 bits (171), Expect = 4e-94
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 2 caacagatgtgaaaccccagaggagtgatcctgagaacagagggtggcgttggcttaaat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caacagatgtgaaaccccagaggagtgatcctgagaacagagggtggcgttggcttaaat 60
Query: 62 ttgatttgcattgctgctgcctgctcctgccatacattaaatcaaaaagattgtatgtgg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgatttgcattgctgctgcctgctcctgccatacattaaatcaaaaagattgtatgtgg 120
Query: 122 ccaacgcaccttgtgttctcaggtcacccctttgggaattcaattgtcaat 172
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccaacgcaccttgtgttctcaggtcacccctttgggaattcaattgtcaat 171
>41078_gra-MIR398:mirbase
Length = 123
Score = 54.0 bits (27), Expect = 4e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 131 cttgtgttctcaggtcacccctttggg 157
|||||||||||||||||||||||||||
Sbjct: 64 cttgtgttctcaggtcacccctttggg 90
>41059_ghr-MIR398:mirbase
Length = 106
Score = 54.0 bits (27), Expect = 4e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 131 cttgtgttctcaggtcacccctttggg 157
|||||||||||||||||||||||||||
Sbjct: 64 cttgtgttctcaggtcacccctttggg 90
>40403_ahy-MIR398:mirbase
Length = 153
Score = 54.0 bits (27), Expect = 4e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 129 accttgtgttctcaggtcacccctttg 155
|||||||||||||||||||||||||||
Sbjct: 125 accttgtgttctcaggtcacccctttg 151
>41800_bdi-MIR398b:mirbase
Length = 163
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 132 ttgtgttctcaggtcacccctttggg 157
||||||||||||||||||||||||||
Sbjct: 100 ttgtgttctcaggtcacccctttggg 125
>41665_vvi-MIR398a:mirbase
Length = 103
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 132 ttgtgttctcaggtcacccctttggg 157
||||||||||||||||||||||||||
Sbjct: 72 ttgtgttctcaggtcacccctttggg 97
>41190_aqc-MIR398a:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 132 ttgtgttctcaggtcacccctttggg 157
||||||||||||||||||||||||||
Sbjct: 65 ttgtgttctcaggtcacccctttggg 90
>42039_osa-MIR398a:mirbase
Length = 115
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 133 tgtgttctcaggtcacccctttggg 157
|||||||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccctttggg 109
>41445_ptc-MIR398a:mirbase
Length = 109
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 133 tgtgttctcaggtcacccctttggg 157
|||||||||||||||||||||||||
Sbjct: 80 tgtgttctcaggtcacccctttggg 104
>40381_rco-MIR398a:mirbase
Length = 91
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 133 tgtgttctcaggtcacccctttggg 157
|||||||||||||||||||||||||
Sbjct: 66 tgtgttctcaggtcacccctttggg 90
>40728_mtr-MIR398a:mirbase
Length = 98
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 132 ttgtgttctcaggtcacccctttg 155
||||||||||||||||||||||||
Sbjct: 72 ttgtgttctcaggtcacccctttg 95
>40479_gma-MIR398b:mirbase
Length = 135
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 132 ttgtgttctcaggtcacccctttg 155
||||||||||||||||||||||||
Sbjct: 95 ttgtgttctcaggtcacccctttg 118
>40478_gma-MIR398a:mirbase
Length = 116
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 132 ttgtgttctcaggtcacccctttg 155
||||||||||||||||||||||||
Sbjct: 76 ttgtgttctcaggtcacccctttg 99
>40308_bol-MIR398a:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 132 ttgtgttctcaggtcacccctttg 155
||||||||||||||||||||||||
Sbjct: 70 ttgtgttctcaggtcacccctttg 93
>40089_ath-MIR398a:mirbase
Length = 105
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 132 ttgtgttctcaggtcacccctttg 155
||||||||||||||||||||||||
Sbjct: 74 ttgtgttctcaggtcacccctttg 97
>39881_aly-MIR398a:mirbase
Length = 182
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 132 ttgtgttctcaggtcacccctttg 155
||||||||||||||||||||||||
Sbjct: 121 ttgtgttctcaggtcacccctttg 144
>41145_tcc-MIR398b:mirbase
Length = 165
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 132 ttgtgttctcaggtcacccctt 153
||||||||||||||||||||||
Sbjct: 124 ttgtgttctcaggtcacccctt 145
>40091_ath-MIR398c:mirbase
Length = 115
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 133 tgtgttctcaggtcacccct 152
||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccct 104
>40090_ath-MIR398b:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 133 tgtgttctcaggtcacccct 152
||||||||||||||||||||
Sbjct: 86 tgtgttctcaggtcacccct 105
>39882_aly-MIR398b:mirbase
Length = 142
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 133 tgtgttctcaggtcacccct 152
||||||||||||||||||||
Sbjct: 91 tgtgttctcaggtcacccct 110
