miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29168_hsa-mir-1302-8:mirbase
Length = 128
Score = 238 bits (120), Expect = 8e-64
Identities = 126/128 (98%)
Strand = Plus / Plus
Query: 1 cccatttaaacttgaatttcatataaacagagtaattttcagcattagtgtatcacatgc 60
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 cccatttaaacttgaatttcatataaacaccgtaattttcagcattagtgtatcacatgc 60
Query: 61 agtatttgggacatacttatgctaaaaaattaggtggtgttgatctgaaattccagtgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agtatttgggacatacttatgctaaaaaattaggtggtgttgatctgaaattccagtgta 120
Query: 121 gatgggca 128
||||||||
Sbjct: 121 gatgggca 128
>30721_ptr-mir-1302-8:mirbase
Length = 127
Score = 236 bits (119), Expect = 3e-63
Identities = 125/127 (98%)
Strand = Plus / Plus
Query: 1 cccatttaaacttgaatttcatataaacagagtaattttcagcattagtgtatcacatgc 60
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 cccatttaaacttgaatttcatataaacaccgtaattttcagcattagtgtatcacatgc 60
Query: 61 agtatttgggacatacttatgctaaaaaattaggtggtgttgatctgaaattccagtgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agtatttgggacatacttatgctaaaaaattaggtggtgttgatctgaaattccagtgta 120
Query: 121 gatgggc 127
|||||||
Sbjct: 121 gatgggc 127
>27303_eca-mir-1302d-4:mirbase
Length = 104
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 57 atgcagtatttgggacatacttatgctaaaaaatt 91
||||| |||||||||||||||||||||||||||||
Sbjct: 49 atgcaatatttgggacatacttatgctaaaaaatt 83
>29166_hsa-mir-1302-6:mirbase
Length = 90
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 63 tatttgggacatacttatgctaaaaaa 89
|||||||||||||||||||||||||||
Sbjct: 53 tatttgggacatacttatgctaaaaaa 79
>30719_ptr-mir-1302-6:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 63 tatttgggacatacttatgctaaaaaa 89
|||||||||||||||||||||||||||
Sbjct: 53 tatttgggacatacttatgctaaaaaa 79
>31358_ppy-mir-1302-3:mirbase
Length = 90
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 63 tatttgggacatacttatgctaaaaaa 89
|||||||||||||||||||||||||||
Sbjct: 53 tatttgggacatacttatgctaaaaaa 79
>29159_hsa-mir-1302-1:mirbase
Length = 143
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 tatttgggacatacttatgctaaaaa 88
||||||||||||||||||||||||||
Sbjct: 72 tatttgggacatacttatgctaaaaa 97
>30714_ptr-mir-1302-1:mirbase
Length = 142
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 tatttgggacatacttatgctaaaaa 88
||||||||||||||||||||||||||
Sbjct: 72 tatttgggacatacttatgctaaaaa 97
>29160_hsa-mir-1302-10:mirbase
Length = 138
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 tttgggacatacttatgctaaaaaa 89
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>29161_hsa-mir-1302-11:mirbase
Length = 138
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 tttgggacatacttatgctaaaaaa 89
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>29162_hsa-mir-1302-2:mirbase
Length = 138
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 tttgggacatacttatgctaaaaaa 89
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>29163_hsa-mir-1302-3:mirbase
Length = 138
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 tttgggacatacttatgctaaaaaa 89
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>29164_hsa-mir-1302-4:mirbase
Length = 150
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 64 atttgggacatacttatgctaaaaaatta 92
|||||||||||||||||||||||| ||||
Sbjct: 75 atttgggacatacttatgctaaaatatta 103
>29169_hsa-mir-1302-9:mirbase
Length = 138
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 tttgggacatacttatgctaaaaaa 89
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>30715_ptr-mir-1302-2:mirbase
Length = 137
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 tttgggacatacttatgctaaaaaa 89
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>30716_ptr-mir-1302-3:mirbase
Length = 137
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 tttgggacatacttatgctaaaaaa 89
|||||||||||||||||||||||||
Sbjct: 71 tttgggacatacttatgctaaaaaa 95
>30717_ptr-mir-1302-4:mirbase
Length = 137
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 tttgggacatacttatgctaaaaaa 89
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>30718_ptr-mir-1302-5:mirbase
Length = 137
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 tttgggacatacttatgctaaaaaa 89
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>31356_ppy-mir-1302-1:mirbase
Length = 137
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 tttgggacatacttatgctaaaaaa 89
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>31357_ppy-mir-1302-2:mirbase
Length = 137
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 tttgggacatacttatgctaaaaaa 89
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>29167_hsa-mir-1302-7:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 ttgggacatacttatgctaaaaaa 89
||||||||||||||||||||||||
Sbjct: 39 ttgggacatacttatgctaaaaaa 62
>30720_ptr-mir-1302-7:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 ttgggacatacttatgctaaaaaa 89
||||||||||||||||||||||||
Sbjct: 39 ttgggacatacttatgctaaaaaa 62
>31359_ppy-mir-1302-4:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 ttgggacatacttatgctaaaaaa 89
||||||||||||||||||||||||
Sbjct: 40 ttgggacatacttatgctaaaaaa 63
>29165_hsa-mir-1302-5:mirbase
Length = 150
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 tttgggacatacttatgctaaaa 87
|||||||||||||||||||||||
Sbjct: 76 tttgggacatacttatgctaaaa 98
>27302_eca-mir-1302c-5:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 51 tatcacatgcagtatttgggacatacttatgctaaaaa 88
|||| |||||| |||||| ||||||||||| |||||||
Sbjct: 52 tatcccatgcaatatttgcgacatacttatactaaaaa 89
>27301_eca-mir-1302b-2:mirbase
Length = 134
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 catgcagtatttgggacatacttat 80
|||||| ||||||||||||||||||
Sbjct: 64 catgcaatatttgggacatacttat 88
>27300_eca-mir-1302-1:mirbase
Length = 58
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 64 atttgggacatacttatgctaaaa 87
||||||||||||||||| ||||||
Sbjct: 31 atttgggacatacttatactaaaa 54
