miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26383_tgu-let-7e:mirbase
Length = 92
Score = 119 bits (60), Expect = 5e-28
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 20 tccttgaggctgaggtagtagattgaatagttgtggggtcacggcctccctgtgtgctaa 79
|||||||||||||||||||||||||||||||||||| ||| | ||||||| || |||||
Sbjct: 1 tccttgaggctgaggtagtagattgaatagttgtggagtctggtcctccctctgagctaa 60
Query: 80 ctatacaatctactgtctttcctgaggcgaca 111
||||||||||||||||||||||| ||| ||||
Sbjct: 61 ctatacaatctactgtctttcctaaggagaca 92
>25878_gga-let-7k:mirbase
Length = 83
Score = 95.6 bits (48), Expect = 7e-21
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 27 ggctgaggtagtagattgaatagttgtggggtcacggcctccctgtgtgctaactataca 86
||||||||||||||||||||||||||||| ||| ||||||| || ||||||||||||
Sbjct: 1 ggctgaggtagtagattgaatagttgtggagtcctatcctccctttgagctaactataca 60
Query: 87 atctactgtctttcct 102
||||||||||||||||
Sbjct: 61 atctactgtctttcct 76
>34678_tni-let-7e:mirbase
Length = 100
Score = 79.8 bits (40), Expect = 4e-16
Identities = 76/87 (87%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 17 ctgtccttgaggctgaggtagtagattgaatagttgtggggt--cacggcctccctgtgt 74
||||||||| |||||||||||||||||||||||||||||||| | |||| ||||
Sbjct: 2 ctgtccttggggctgaggtagtagattgaatagttgtggggttgtgtgacctctatgtga 61
Query: 75 gctaactatacaatctactgtctttcc 101
| |||||||||||||||||||||||||
Sbjct: 62 gataactatacaatctactgtctttcc 88
>34176_dre-let-7e-1:mirbase
Length = 100
Score = 77.8 bits (39), Expect = 2e-15
Identities = 84/98 (85%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 17 ctgtccttgaggctgaggtagtagattgaatagttgtggggtca--cggcctccctgtgt 74
|||| |||| ||||||||||||||||||||||||||||| | | || ||| || ||
Sbjct: 2 ctgttcttggggctgaggtagtagattgaatagttgtggagccctgcgctctctctctga 61
Query: 75 gctaactatacaatctactgtctttcctgaggcgacag 112
| |||||||||||||||||||||||||| |||||||||
Sbjct: 62 gataactatacaatctactgtctttcctaaggcgacag 99
>34177_dre-let-7e-2:mirbase
Length = 100
Score = 77.8 bits (39), Expect = 2e-15
Identities = 84/98 (85%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 17 ctgtccttgaggctgaggtagtagattgaatagttgtggggtca--cggcctccctgtgt 74
|||| |||| ||||||||||||||||||||||||||||| | | || ||| || ||
Sbjct: 2 ctgttcttggggctgaggtagtagattgaatagttgtggagccctgcgctctctctctga 61
Query: 75 gctaactatacaatctactgtctttcctgaggcgacag 112
| |||||||||||||||||||||||||| |||||||||
Sbjct: 62 gataactatacaatctactgtctttcctaaggcgacag 99
>34530_fru-let-7e:mirbase
Length = 100
Score = 69.9 bits (35), Expect = 4e-13
Identities = 83/98 (84%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 17 ctgtccttgaggctgaggtagtagattgaatagttgtggggt--cacggcctccctgtgt 74
||||||||| || ||||||||||||||||||||||||||||| | |||| |||
Sbjct: 2 ctgtccttggggttgaggtagtagattgaatagttgtggggttgtgtgacctcttagtga 61
Query: 75 gctaactatacaatctactgtctttcctgaggcgacag 112
| |||||||||||||||||||||||||| ||| |||||
Sbjct: 62 gataactatacaatctactgtctttcctaaggagacag 99
>25870_gga-let-7a-3:mirbase
Length = 76
Score = 58.0 bits (29), Expect = 2e-09
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 30 tgaggtagtagattgaatagttgtggggtcacggcctccctgtgtgctaactatacaatc 89
||||||||||| ||| |||||| | |||| | | ||| ||||| | |||||||||||||
Sbjct: 4 tgaggtagtaggttgtatagttttagggttatgccctgcctgtcagataactatacaatc 63
Query: 90 tactgtctttcct 102
|||||||||||||
Sbjct: 64 tactgtctttcct 76
>25680_xtr-let-7e-2:mirbase
Length = 93
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcctga 104
||||||||||||||||||||||||||||
Sbjct: 58 taactatacaatctactgtctttcctga 85
>26375_tgu-let-7a-1:mirbase
Length = 92
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcctga 104
||||||||||||||||||||||||||||
Sbjct: 58 taactatacaatctactgtctttcctga 85
>31756_mmu-let-7c-2:mirbase
Length = 95
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcctga 104
||||||||||||||||||||||||||||
Sbjct: 59 taactatacaatctactgtctttcctga 86
>32642_rno-let-7c-2:mirbase
Length = 95
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcctga 104
||||||||||||||||||||||||||||
Sbjct: 59 taactatacaatctactgtctttcctga 86
>25681_xtr-let-7f:mirbase
Length = 83
Score = 52.0 bits (26), Expect = 1e-07
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 30 tgaggtagtagattgaatagttgtggggtcacggcctccctgtgtgctaactatacaatc 89
||||||||||||||| |||||| ||||||||| || ||| | | |||||||||| |
Sbjct: 8 tgaggtagtagattgtatagttttggggtcacacccgatctgggagataactatacagtt 67
Query: 90 tactgtctttcctg 103
||||||||||||||
Sbjct: 68 tactgtctttcctg 81
>25868_gga-let-7a-1:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcct 102
||||||||||||||||||||||||||
Sbjct: 61 taactatacaatctactgtctttcct 86
>26930_eca-let-7a-2:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcct 102
||||||||||||||||||||||||||
Sbjct: 49 taactatacaatctactgtctttcct 74
>27629_mml-let-7a-1:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcct 102
||||||||||||||||||||||||||
Sbjct: 54 taactatacaatctactgtctttcct 79
>27631_mml-let-7a-3:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcct 102
||||||||||||||||||||||||||
Sbjct: 49 taactatacaatctactgtctttcct 74
>28339_hsa-let-7a-1:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcct 102
||||||||||||||||||||||||||
Sbjct: 54 taactatacaatctactgtctttcct 79
>28341_hsa-let-7a-3:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcct 102
||||||||||||||||||||||||||
Sbjct: 49 taactatacaatctactgtctttcct 74
>30126_ptr-let-7a-1:mirbase
Length = 79
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcct 102
||||||||||||||||||||||||||
Sbjct: 53 taactatacaatctactgtctttcct 78
>30128_ptr-let-7a-3:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcct 102
||||||||||||||||||||||||||
Sbjct: 48 taactatacaatctactgtctttcct 73
>30731_ppy-let-7a-1:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcct 102
||||||||||||||||||||||||||
Sbjct: 54 taactatacaatctactgtctttcct 79
>30733_ppy-let-7a-3:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcct 102
||||||||||||||||||||||||||
Sbjct: 49 taactatacaatctactgtctttcct 74
>31752_mmu-let-7a-1:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcct 102
||||||||||||||||||||||||||
Sbjct: 61 taactatacaatctactgtctttcct 86
>32638_rno-let-7a-1:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcct 102
||||||||||||||||||||||||||
Sbjct: 61 taactatacaatctactgtctttcct 86
>33108_bta-let-7a-1:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcct 102
||||||||||||||||||||||||||
Sbjct: 54 taactatacaatctactgtctttcct 79
>33110_bta-let-7a-3:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcct 102
||||||||||||||||||||||||||
Sbjct: 49 taactatacaatctactgtctttcct 74
>33899_ssc-let-7a-2:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcct 102
||||||||||||||||||||||||||
Sbjct: 59 taactatacaatctactgtctttcct 84
>26605_cfa-let-7a-1:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcc 101
|||||||||||||||||||||||||
Sbjct: 45 taactatacaatctactgtctttcc 69
>26610_cfa-let-7f:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 30 tgaggtagtagattgaatagttgtggggt 58
||||||||||||||| |||||||||||||
Sbjct: 1 tgaggtagtagattgtatagttgtggggt 29
>26934_eca-let-7f:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 30 tgaggtagtagattgaatagttgtggggt 58
||||||||||||||| |||||||||||||
Sbjct: 7 tgaggtagtagattgtatagttgtggggt 35
>27323_mdo-let-7f-1:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 30 tgaggtagtagattgaatagttgtggggt 58
||||||||||||||| |||||||||||||
Sbjct: 7 tgaggtagtagattgtatagttgtggggt 35
>27636_mml-let-7f-1:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 30 tgaggtagtagattgaatagttgtggggt 58
||||||||||||||| |||||||||||||
Sbjct: 7 tgaggtagtagattgtatagttgtggggt 35
>28346_hsa-let-7f-1:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 30 tgaggtagtagattgaatagttgtggggt 58
||||||||||||||| |||||||||||||
Sbjct: 7 tgaggtagtagattgtatagttgtggggt 35
>30133_ptr-let-7f-1:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 30 tgaggtagtagattgaatagttgtggggt 58
||||||||||||||| |||||||||||||
Sbjct: 6 tgaggtagtagattgtatagttgtggggt 34
>30738_ppy-let-7f-1:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 30 tgaggtagtagattgaatagttgtggggt 58
||||||||||||||| |||||||||||||
Sbjct: 7 tgaggtagtagattgtatagttgtggggt 35
>31759_mmu-let-7f-1:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 30 tgaggtagtagattgaatagttgtggggt 58
||||||||||||||| |||||||||||||
Sbjct: 8 tgaggtagtagattgtatagttgtggggt 36
>32645_rno-let-7f-1:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 30 tgaggtagtagattgaatagttgtggggt 58
||||||||||||||| |||||||||||||
Sbjct: 8 tgaggtagtagattgtatagttgtggggt 36
>33101_rno-mir-3596d:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 30 tgaggtagtagattgaatagttgtggggt 58
||||||||||||||| |||||||||||||
Sbjct: 86 tgaggtagtagattgtatagttgtggggt 58
>33115_bta-let-7f-1:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 30 tgaggtagtagattgaatagttgtggggt 58
||||||||||||||| |||||||||||||
Sbjct: 7 tgaggtagtagattgtatagttgtggggt 35
>27318_mdo-let-7a-1:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttc 100
||||||||||||||||||||||||
Sbjct: 63 taactatacaatctactgtctttc 86
>34165_dre-let-7a-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 6e-06
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 30 tgaggtagtagattgaatagttgtggggtcacggcctccctgtgtgctaactatacaatc 89
||||||||||| ||| |||||| | ||||||| || | ||| | | ||||||||||| |
Sbjct: 11 tgaggtagtaggttgtatagttttagggtcacacccacactgggagataactatacaacc 70
Query: 90 tactgtctttc 100
|||||||||||
Sbjct: 71 tactgtctttc 81
>25413_pma-let-7c:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcc 101
||||||| |||||||||||||||||
Sbjct: 62 taactatgcaatctactgtctttcc 86
>25874_gga-let-7f:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 30 tgaggtagtagattgaatagttgtggggt 58
||||||||||||||| |||||||| ||||
Sbjct: 7 tgaggtagtagattgtatagttgtagggt 35
>26384_tgu-let-7f:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 30 tgaggtagtagattgaatagttgtggggt 58
||||||||||||||| |||||||| ||||
Sbjct: 11 tgaggtagtagattgtatagttgtagggt 39
>27320_mdo-let-7a-3:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcc 101
|||||||||| ||||||||||||||
Sbjct: 54 taactatacagtctactgtctttcc 78
>27324_mdo-let-7f-2:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcc 101
|||||||||| ||||||||||||||
Sbjct: 52 taactatacagtctactgtctttcc 76
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 30 tgaggtagtagattgaatagttgtggggtcac 61
||||||||||||||| |||||| | |||||||
Sbjct: 5 tgaggtagtagattgtatagttttagggtcac 36
>27637_mml-let-7f-2:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcc 101
|||||||||| ||||||||||||||
Sbjct: 55 taactatacagtctactgtctttcc 79
>28347_hsa-let-7f-2:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcc 101
|||||||||| ||||||||||||||
Sbjct: 55 taactatacagtctactgtctttcc 79
>30134_ptr-let-7f-2:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcc 101
|||||||||| ||||||||||||||
Sbjct: 55 taactatacagtctactgtctttcc 79
>30739_ppy-let-7f-2:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcc 101
|||||||||| ||||||||||||||
Sbjct: 55 taactatacagtctactgtctttcc 79
>31414_oan-let-7f-2:mirbase
Length = 130
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcc 101
|||||||||| ||||||||||||||
Sbjct: 78 taactatacagtctactgtctttcc 102
>31760_mmu-let-7f-2:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcc 101
|||||||||| ||||||||||||||
Sbjct: 55 taactatacagtctactgtctttcc 79
>32646_rno-let-7f-2:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcc 101
|||||||||| ||||||||||||||
Sbjct: 55 taactatacagtctactgtctttcc 79
>33116_bta-let-7f-2:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcc 101
|||||||||| ||||||||||||||
Sbjct: 55 taactatacagtctactgtctttcc 79
>33902_ssc-let-7f:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcc 101
|||||||||| ||||||||||||||
Sbjct: 55 taactatacagtctactgtctttcc 79
>34178_dre-let-7f:mirbase
Length = 116
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 30 tgaggtagtagattgaatagttgtggggt 58
||||||||||||||| |||||||| ||||
Sbjct: 20 tgaggtagtagattgtatagttgtagggt 48
>34180_dre-let-7g-2:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcc 101
|||||||||| ||||||||||||||
Sbjct: 61 taactatacagtctactgtctttcc 85
>34531_fru-let-7g:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcc 101
|||||||||| ||||||||||||||
Sbjct: 53 taactatacagtctactgtctttcc 77
>34679_tni-let-7g:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 77 taactatacaatctactgtctttcc 101
|||||||||| ||||||||||||||
Sbjct: 53 taactatacagtctactgtctttcc 77
