miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01896;mir-142;AAGW01608371.1/689-584 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 167 bits (84), Expect = 4e-41
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 15 acagtgcagtcatccataaagtagaaagcactactaacagcgctgtagggtgtagtgttt 74
|||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 11 acagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgttt 70
Query: 75 cctactttatggatgagtgtactgtgggcttcggag 110
||||||||||||||||||||||||||||||||||||
Sbjct: 71 cctactttatggatgagtgtactgtgggcttcggag 106
>RF01896;mir-142;AADN02026096.1/1575-1681 9031:Gallus gallus
(chicken)
Length = 107
Score = 149 bits (75), Expect = 9e-36
Identities = 94/99 (94%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 13 agacagtgcagtcatccataaagtagaaagcactactaa-cagcgctgtagggtgtagtg 71
|||||||||||||| |||||||||||||||||||||||| |||| ||| |||||||||||
Sbjct: 9 agacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtg 68
Query: 72 tttcctactttatggatgagtgtactgtgggcttcggag 110
||||||||||||||||||||||||||||||||| |||||
Sbjct: 69 tttcctactttatggatgagtgtactgtgggctacggag 107
>RF01896;mir-142;M31826.1/156-256 9606:Homo sapiens (human)
Length = 101
Score = 145 bits (73), Expect = 1e-34
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 6 gacagacagacagtgcagtcatccataaagtagaaagcactactaacagcgctgtagggt 65
||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||
Sbjct: 2 gacagacagacagtgcagtcacccataaagtagaaagcactactaacagcactggagggt 61
Query: 66 gtagtgtttcctactttatggatga 90
|||||||||||||||||||||||||
Sbjct: 62 gtagtgtttcctactttatggatga 86
>RF01896;mir-142;BAAE01037208.1/1195-1089 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 97.6 bits (49), Expect = 3e-20
Identities = 83/93 (89%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 15 acagtgcagtcatccataaagtagaaagcactactaacagcgctgt-agggtgtagtgtt 73
||||||||||||||||||||||||||||||||||||| | || | ||||||||||
Sbjct: 11 acagtgcagtcatccataaagtagaaagcactactaaactccttgccaaagtgtagtgtt 70
Query: 74 tcctactttatggatgagtgtactgtgggcttc 106
|||||||||||||||||||||||||| ||||||
Sbjct: 71 tcctactttatggatgagtgtactgttggcttc 103
>RF01896;mir-142;AAVX01306460.1/1282-1378 7868:Callorhinchus milii
(ghost shark)
Length = 97
Score = 87.7 bits (44), Expect = 3e-17
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 9 agacagacagtgcagtcatccataaagtagaaagcactactaac 52
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 agacagacagtgcagtcatccataaagtagaaagcactactaac 48
>RF01896;mir-142;AAWZ01023107.1/41327-41220 28377:Anolis
carolinensis (green anole)
Length = 108
Score = 79.8 bits (40), Expect = 7e-15
Identities = 79/90 (87%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 14 gacagtgcagtcatccataaagtagaaagcactactaacagcgctgtagg---gtgtagt 70
||||||| | |||||||||||||||||||||||||||| || |||| |||||||
Sbjct: 10 gacagtggactcatccataaagtagaaagcactactaaacgc-ctgtgcccaagtgtagt 68
Query: 71 gtttcctactttatggatgagtgtactgtg 100
||||||||||||||||||||||||||||||
Sbjct: 69 gtttcctactttatggatgagtgtactgtg 98
>RF01896;mir-142;CU633486.9/28311-28205 7955:Danio rerio
(zebrafish)
Length = 107
Score = 75.8 bits (38), Expect = 1e-13
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 15 acagtgcagtcatccataaagtagaaagcactactaa-cagcgctgtagggtgtagtgtt 73
|||||||||||| ||||||||||| ||||||||||| | | || | ||||||||||
Sbjct: 11 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 70
Query: 74 tcctactttatggatgagtgtactgt 99
||||||||||||||||||||||||||
Sbjct: 71 tcctactttatggatgagtgtactgt 96
>RF01896;mir-142;BAAF04037757.1/8225-8119 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 69.9 bits (35), Expect = 7e-12
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 23 gtcatccataaagtagaaagcactactaa-cagcgctgtagggtgtagtgtttcctactt 81
|||| |||||||||||||||||||||||| | | || || ||||||||||||||||||
Sbjct: 19 gtcacccataaagtagaaagcactactaaacttcactatacagtgtagtgtttcctactt 78
Query: 82 tatggatgagt 92
|||||||||||
Sbjct: 79 tatggatgagt 89
