miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28464_hsa-mir-144:mirbase
Length = 86
Score = 123 bits (62), Expect = 4e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 37 ggggccctggcggggatatcatcgtatactgtaagtttgctatgagacactacagtatag 96
||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 2 ggggccctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatag 61
Query: 97 atgatgtactagcccggg 114
|||||||||||| |||||
Sbjct: 62 atgatgtactagtccggg 79
>30236_ptr-mir-144:mirbase
Length = 86
Score = 123 bits (62), Expect = 4e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 37 ggggccctggcggggatatcatcgtatactgtaagtttgctatgagacactacagtatag 96
||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 2 ggggccctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatag 61
Query: 97 atgatgtactagcccggg 114
|||||||||||| |||||
Sbjct: 62 atgatgtactagtccggg 79
>30848_ppy-mir-144:mirbase
Length = 86
Score = 119 bits (60), Expect = 5e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 37 ggggccctggcggggatatcatcgtatactgtaagtttgctatgagacactacagtatag 96
||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 2 ggggccctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatag 61
Query: 97 atgatgtactag 108
||||||||||||
Sbjct: 62 atgatgtactag 73
>27392_mdo-mir-144:mirbase
Length = 85
Score = 117 bits (59), Expect = 2e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 36 cggggccctggcggggatatcatcgtatactgtaagtttgctatgagacactacagtata 95
|||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 cggggcccaggccgggatatcatcgtatactgtaagtttgcaatgagacactacagtata 60
Query: 96 gatgatgtact 106
|||||||||||
Sbjct: 61 gatgatgtact 71
>30099_ppa-mir-144:mirbase
Length = 86
Score = 117 bits (59), Expect = 2e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 37 ggggccctggcggggatatcatcgtatactgtaagtttgctatgagacactacagtatag 96
||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 2 ggggccctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatag 61
Query: 97 atgatgtacta 107
|||||||||||
Sbjct: 62 atgatgtacta 72
>27749_mml-mir-144:mirbase
Length = 86
Score = 115 bits (58), Expect = 9e-27
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 37 ggggccctggcggggatatcatcgtatactgtaagtttgctatgagacactacagtatag 96
||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 2 ggggccctggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatag 61
Query: 97 atgatgtactagcccggg 114
|||||||||||| |||||
Sbjct: 62 atgatgtactagtccggg 79
>28215_mne-mir-144:mirbase
Length = 86
Score = 115 bits (58), Expect = 9e-27
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 37 ggggccctggcggggatatcatcgtatactgtaagtttgctatgagacactacagtatag 96
||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 2 ggggccctggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatag 61
Query: 97 atgatgtactagcccggg 114
|||||||||||| |||||
Sbjct: 62 atgatgtactagtccggg 79
>33230_bta-mir-144:mirbase
Length = 84
Score = 111 bits (56), Expect = 1e-25
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 38 gggccctggcggggatatcatcgtatactgtaagtttgctatgagacactacagtataga 97
|||||||| | ||||||||||| |||||||||||||||| | ||||||||||||||||||
Sbjct: 1 gggccctgactgggatatcatcatatactgtaagtttgcaacgagacactacagtataga 60
Query: 98 tgatgtactagcccgggtgc 117
||||||||||| ||||||||
Sbjct: 61 tgatgtactagtccgggtgc 80
>26474_tgu-mir-144:mirbase
Length = 70
Score = 105 bits (53), Expect = 8e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 50 ggatatcatcgtatactgtaagtttgctatgagacactacagtatagatgatgtact 106
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4 ggatatcatcgtatactgtaagttggctatgagacactacagtatagatgatgtact 60
>27044_eca-mir-144:mirbase
Length = 66
Score = 103 bits (52), Expect = 3e-23
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 49 gggatatcatcgtatactgtaagtttgctatgagacactacagtatagatgatgtactag 108
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5 gggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtactag 64
>32750_rno-mir-144:mirbase
Length = 83
Score = 101 bits (51), Expect = 1e-22
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 38 gggccctggcggggatatcatcgtatactgtaagtttgctatgagacactacagtataga 97
||||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 1 gggccttggctgggatatcatcatatactgtaagtttgtgatgagacactacagtataga 60
Query: 98 tgatgtactag 108
|||||||||||
Sbjct: 61 tgatgtactag 71
>31877_mmu-mir-144:mirbase
Length = 66
Score = 95.6 bits (48), Expect = 8e-21
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 49 gggatatcatcgtatactgtaagtttgctatgagacactacagtatagatgatgtactag 108
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5 gggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgtactag 64
>25964_gga-mir-144:mirbase
Length = 85
Score = 89.7 bits (45), Expect = 5e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 50 ggatatcatcgtatactgtaagtttgctatgagacactacagtatagatgatgtact 106
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
>25793_xtr-mir-144:mirbase
Length = 62
Score = 85.7 bits (43), Expect = 8e-18
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 49 gggatatcatcgtatactgtaagtttgctatgagacactacagtatagatgatgtacta 107
||||||||||| ||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 4 gggatatcatcatatactgtaagtttgttttaagacactacagtatagatgatgtacta 62
>26718_cfa-mir-144:mirbase
Length = 60
Score = 77.8 bits (39), Expect = 2e-15
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 50 ggatatcatcgtatactgtaagtttgctatgagacactacagtatagatgatgtactag 108
|||||||||| |||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 2 ggatatcatcatatactgtaagtttgcgacaagatactacagtatagatgatgtactag 60
>34316_dre-mir-144:mirbase
Length = 89
Score = 77.8 bits (39), Expect = 2e-15
Identities = 55/59 (93%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 50 ggatatcatcgtatactgtaagtttgctat-gagacactacagtatagatgatgtacta 107
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 13 ggatatcatcgtatactgtaagttcattattgagacactacagtatagatgatgtacta 71
>34605_fru-mir-144:mirbase
Length = 73
Score = 61.9 bits (31), Expect = 1e-10
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 50 ggatatcatcgtatactgtaagtttgctat-gagacactacagtatagatgatgtacta 107
|||||||||| ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 9 ggatatcatctaatactgtaagtttattaaagagacactacagtatagatgatgtacta 67
>34752_tni-mir-144:mirbase
Length = 74
Score = 61.9 bits (31), Expect = 1e-10
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 50 ggatatcatcgtatactgtaagtttgctat-gagacactacagtatagatgatgtacta 107
|||||||||| |||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 10 ggatatcatcttatactgtaagtttaataaagtgacactacagtatagatgatgtacta 68
