miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00130;mir-192;ABRP01030089.1/479-588 132908:Pteropus vampyrus
(large flying fox)
Length = 110
Score = 117 bits (59), Expect = 3e-26
Identities = 81/87 (93%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 6 gcacagggctctgacctatgaattgacagccagttctctc-tgacccctctggctgccaa 64
||||||||||||||||||||| |||||||||||| |||| | ||||||||||||||||
Sbjct: 14 gcacagggctctgacctatgagttgacagccagtgctcttgtctcccctctggctgccaa 73
Query: 65 ttccataggtcacaggtatgttcgcct 91
|||||||||||||||||||||||||||
Sbjct: 74 ttccataggtcacaggtatgttcgcct 100
>RF00130;mir-192;ABRQ01130986.1/8285-8394 9813:Procavia capensis
(cape rock hyrax)
Length = 110
Score = 117 bits (59), Expect = 3e-26
Identities = 81/87 (93%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 6 gcacagggctctgacctatgaattgacagccagttctctctga-cccctctggctgccaa 64
|||||||||||||||||||||||||||||||||| | ||| | ||||| ||||||||||
Sbjct: 14 gcacagggctctgacctatgaattgacagccagtgccctcggctcccctttggctgccaa 73
Query: 65 ttccataggtcacaggtatgttcgcct 91
|||||||||||||||||||||||||||
Sbjct: 74 ttccataggtcacaggtatgttcgcct 100
>RF00130;mir-192;AANN01720898.1/1196-1090 9365:Erinaceus europaeus
(western European hedgehog)
Length = 107
Score = 111 bits (56), Expect = 2e-24
Identities = 74/79 (93%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 9 cagggctctgacctatgaattgacagccagttctctctgacccctctggctgccaattcc 68
|||||||||||||||||| |||||||||||| | |||| ||||||||||||||||||||
Sbjct: 17 cagggctctgacctatgacttgacagccagtgccctct--cccctctggctgccaattcc 74
Query: 69 ataggtcacaggtatgttc 87
|||||||||||||||||||
Sbjct: 75 ataggtcacaggtatgttc 93
>RF00130;mir-192;AC127556.4/107222-107331 10090:Mus musculus
(house mouse)
Length = 110
Score = 109 bits (55), Expect = 6e-24
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 6 gcacagggctctgacctatgaattgacagccagttctctctgacc-cctctggctgccaa 64
|||||||||||||||||||||||||||||||||| |||| | | ||||||||||||||
Sbjct: 14 gcacagggctctgacctatgaattgacagccagtactcttttctctcctctggctgccaa 73
Query: 65 ttccataggtcacaggtatgttc 87
|||||||||||||||||||||||
Sbjct: 74 ttccataggtcacaggtatgttc 96
>RF00130;mir-192;ABRO01037016.1/11465-11572 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 108
Score = 107 bits (54), Expect = 2e-23
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 6 gcacagggctctgacctatgaattgacagccagttctctctgacccctctggctgccaat 65
||||| |||||||||||||||||||||||||||| | || | |||| ||||||||||||
Sbjct: 14 gcacaaggctctgacctatgaattgacagccagtgcgctgtctcccc-ctggctgccaat 72
Query: 66 tccataggtcacaggtatgttcgcct 91
||||||||||||||||||||||||||
Sbjct: 73 tccataggtcacaggtatgttcgcct 98
>RF00130;mir-192;AAYZ01125558.1/348-240 9978:Ochotona princeps
(American pika)
Length = 109
Score = 107 bits (54), Expect = 2e-23
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 6 gcacagggctctgacctatgaattgacagccagttctctctgacccctctggctgccaat 65
|||||||||||||||||||||||||||||||||| | | | ||||||||||||||||
Sbjct: 14 gcacagggctctgacctatgaattgacagccagtgccccgtctgccctctggctgccaat 73
Query: 66 tccataggtcacaggtatgttcgcct 91
| ||||||||||||||||||||||||
Sbjct: 74 tgcataggtcacaggtatgttcgcct 99
>RF00130;mir-192;ABQO011016737.1/1874-1763 9315:Macropus eugenii
(tammar wallaby)
Length = 112
Score = 85.7 bits (43), Expect = 9e-17
Identities = 75/83 (90%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 11 gggctctgacct-atgaattgacagccagttctctctgacccct-ctggctgccaattcc 68
|||||||||||| ||||||||||||||||| ||| | ||| | |||||||||||||||
Sbjct: 20 gggctctgaccttatgaattgacagccagtactcattctccctttctggctgccaattcc 79
Query: 69 ataggtcacaggtatgttcgcct 91
|||||||||||||||||||||||
Sbjct: 80 ataggtcacaggtatgttcgcct 102
>RF00130;mir-192;AAPE01041994.1/454-563 59463:Myotis lucifugus
(little brown bat)
Length = 110
Score = 77.8 bits (39), Expect = 2e-14
Identities = 73/83 (87%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 6 gcacagggctctgacctatgaattgacagccagttctc-tctgacccctctggctgccaa 64
|||||||||||| ||||||||||||||||||| |||| | | ||||||||||||||||
Sbjct: 14 gcacagggctcttccctatgaattgacagccaggtctcttgtttcccctctggctgccaa 73
Query: 65 ttccataggtcacaggtatgttc 87
| ||||||| ||||||||||||
Sbjct: 74 tggcataggtgacaggtatgttc 96
>RF00130;mir-192;AAIY01704218.1/882-773 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 110
Score = 77.8 bits (39), Expect = 2e-14
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 14 ctctgacctatgaattgacagccagttctctctga-cccctctggctgccaattccatag 72
|||||||||||||||||||||||||| | | | ||||||||||||||||| ||||||
Sbjct: 22 ctctgacctatgaattgacagccagtgccttgggctcccctctggctgccaataccatag 81
Query: 73 gtcacaggtatgttcgcct 91
|||||||||||||| ||||
Sbjct: 82 gtcacaggtatgtttgcct 100
>RF00130;mir-192;BAAF04033818.1/3323-3429 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tgacctatgaattgacagccagtt 40
||||||||||||||||||||||||
Sbjct: 25 tgacctatgaattgacagccagtt 48
>RF00130;mir-192;BX248510.4/109218-109112 7955:Danio rerio
(zebrafish)
Length = 107
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgacctatgaattgacagccagt 39
|||||||||||||||||||||||
Sbjct: 24 tgacctatgaattgacagccagt 46
>RF00130;mir-192;CAAE01014650.1/773661-773759 99883:Tetraodon
nigroviridis
Length = 99
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgacctatgaattgacagccagt 39
|||||||||||||||||||||||
Sbjct: 18 tgacctatgaattgacagccagt 40
>RF00130;mir-192;CAAB01000046.1/113260-113358 31033:Takifugu
rubripes
Length = 99
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgacctatgaattgacagccagt 39
|||||||||||||||||||||||
Sbjct: 18 tgacctatgaattgacagccagt 40
