miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27416_mdo-mir-196b:mirbase
Length = 86
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 aactggtctgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aactggtctgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagca 60
Query: 61 cgacactgccttcattacttcagtt 85
||| |||||||||||||||||||||
Sbjct: 61 cgatactgccttcattacttcagtt 85
>31917_mmu-mir-196b:mirbase
Length = 85
Score = 137 bits (69), Expect = 1e-33
Identities = 82/85 (96%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 aactggtctgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagca 60
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 aactggtcggtgatttaggtagtttcctgttgttggga-tccacctttctctcgacagca 59
Query: 61 cgacactgccttcattacttcagtt 85
|||||||||||||||||||||||||
Sbjct: 60 cgacactgccttcattacttcagtt 84
>32784_rno-mir-196b:mirbase
Length = 85
Score = 137 bits (69), Expect = 1e-33
Identities = 82/85 (96%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 aactggtctgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagca 60
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 aactggtcggtgatttaggtagtttcctgttgttggga-tccacctttctctcgacagca 59
Query: 61 cgacactgccttcattacttcagtt 85
|||||||||||||||||||||||||
Sbjct: 60 cgacactgccttcattacttcagtt 84
>33270_bta-mir-196b:mirbase
Length = 85
Score = 137 bits (69), Expect = 1e-33
Identities = 82/85 (96%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 aactggtctgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagca 60
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 aactggtcggtgatttaggtagtttcctgttgttggga-tccacctttctctcgacagca 59
Query: 61 cgacactgccttcattacttcagtt 85
|||||||||||||||||||||||||
Sbjct: 60 cgacactgccttcattacttcagtt 84
>28509_hsa-mir-196b:mirbase
Length = 84
Score = 135 bits (68), Expect = 6e-33
Identities = 81/84 (96%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 2 actggtctgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagcac 61
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 actggtcggtgatttaggtagtttcctgttgttggga-tccacctttctctcgacagcac 59
Query: 62 gacactgccttcattacttcagtt 85
||||||||||||||||||||||||
Sbjct: 60 gacactgccttcattacttcagtt 83
>30273_ptr-mir-196b:mirbase
Length = 83
Score = 135 bits (68), Expect = 6e-33
Identities = 81/84 (96%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 2 actggtctgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagcac 61
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 actggtcggtgatttaggtagtttcctgttgttggga-tccacctttctctcgacagcac 59
Query: 62 gacactgccttcattacttcagtt 85
||||||||||||||||||||||||
Sbjct: 60 gacactgccttcattacttcagtt 83
>30889_ppy-mir-196b:mirbase
Length = 84
Score = 135 bits (68), Expect = 6e-33
Identities = 81/84 (96%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 2 actggtctgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagcac 61
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 actggtcggtgatttaggtagtttcctgttgttggga-tccacctttctctcgacagcac 59
Query: 62 gacactgccttcattacttcagtt 85
||||||||||||||||||||||||
Sbjct: 60 gacactgccttcattacttcagtt 83
>34027_ssc-mir-196b:mirbase
Length = 80
Score = 129 bits (65), Expect = 3e-31
Identities = 78/81 (96%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 3 ctggtctgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagcacg 62
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctggtcggtgatttaggtagtttcctgttgttggga-tccacctttctctcgacagcacg 59
Query: 63 acactgccttcattacttcag 83
|||||||||||||||||||||
Sbjct: 60 acactgccttcattacttcag 80
>34028_ssc-mir-196b:mirbase
Length = 80
Score = 129 bits (65), Expect = 3e-31
Identities = 78/81 (96%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 3 ctggtctgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagcacg 62
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctggtcggtgatttaggtagtttcctgttgttggga-tccacctttctctcgacagcacg 59
Query: 63 acactgccttcattacttcag 83
|||||||||||||||||||||
Sbjct: 60 acactgccttcattacttcag 80
>27081_eca-mir-196b:mirbase
Length = 84
Score = 127 bits (64), Expect = 1e-30
Identities = 80/84 (95%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 2 actggtctgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagcac 61
||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 1 actggtcggtgatttaggtagtttcctgttgttggga-tccagctttctctcgacagcac 59
Query: 62 gacactgccttcattacttcagtt 85
||||||||||||||||||||||||
Sbjct: 60 gacactgccttcattacttcagtt 83
>25986_gga-mir-196-2:mirbase
Length = 94
Score = 121 bits (61), Expect = 8e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 1 aactggtctgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagca 60
||||| |||||| ||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 1 aactgctctgtggtttaggtagtttcatgttgttggggctccacctttctctctacagca 60
Query: 61 cgacactgccttcattacttcagtt 85
||| |||||||| ||||||||||||
Sbjct: 61 cgaaactgccttaattacttcagtt 85
>27792_mml-mir-196b:mirbase
Length = 75
Score = 119 bits (60), Expect = 3e-28
Identities = 73/76 (96%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 2 actggtctgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagcac 61
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 actggtcggtgatttaggtagtttcctgttgttggga-tccacctttctctcgacagcac 59
Query: 62 gacactgccttcatta 77
||||||||||||||||
Sbjct: 60 gacactgccttcatta 75
>26754_cfa-mir-196b:mirbase
Length = 58
Score = 93.7 bits (47), Expect = 2e-20
Identities = 57/59 (96%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 16 taggtagtttcctgttgttggggctccacctttctctcgacagcacgacactgccttca 74
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 taggtagtttcctgttgttggga-tccacctttctctcgacagcacgacactgccttca 58
>25817_xtr-mir-196b:mirbase
Length = 87
Score = 56.0 bits (28), Expect = 4e-09
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 9 tgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagcacgacactg 68
|||| |||||||||||| |||||||||| | |||||||||||| ||| || || ||||
Sbjct: 9 tgtggtttaggtagttttatgttgttgggcattcacctttctctctacaacaagaaactg 68
Query: 69 ccttcattacttcagt 84
|||| ||||| |||||
Sbjct: 69 ccttaattacatcagt 84
>25985_gga-mir-196-1:mirbase
Length = 95
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1 aactggtctgtgatttaggtagtttcctgttgttggg 37
||||| ||||||| |||||||||||| ||||||||||
Sbjct: 9 aactgctctgtgaattaggtagtttcatgttgttggg 45
>34349_dre-mir-196b:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 6 gtctgtgatttaggtagtttcctgttgttggg 37
||||||||||||||||||||| |||||||||
Sbjct: 1 gtctgtgatttaggtagtttcaagttgttggg 32
>25816_xtr-mir-196a:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 7 tctgtgatttaggtagtttcctgttgttggg 37
|||||| ||||||||||||| ||||||||||
Sbjct: 16 tctgtggtttaggtagtttcatgttgttggg 46
>25987_gga-mir-196-3:mirbase
Length = 108
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 7 tctgtgatttaggtagtttcctgttgttggg 37
|||||| ||||||||||||| ||||||||||
Sbjct: 15 tctgtggtttaggtagtttcatgttgttggg 45
>31525_oan-mir-196a:mirbase
Length = 114
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 3 ctggtctgtgatttaggtagtttcctgttgttggg 37
|||||||||| |||||||||||| ||||||||||
Sbjct: 16 ctggtctgtggcttaggtagtttcatgttgttggg 50
>34622_fru-mir-196a-1:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcctgttgttgggg 38
||||||||||||| |||||||||||
Sbjct: 14 tttaggtagtttcatgttgttgggg 38
>34623_fru-mir-196a-2:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcctgttgttgggg 38
||||||||||||| |||||||||||
Sbjct: 9 tttaggtagtttcatgttgttgggg 33
>34769_tni-mir-196a-1:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcctgttgttgggg 38
||||||||||||| |||||||||||
Sbjct: 14 tttaggtagtttcatgttgttgggg 38
>34770_tni-mir-196a-2:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcctgttgttgggg 38
||||||||||||| |||||||||||
Sbjct: 9 tttaggtagtttcatgttgttgggg 33
>26752_cfa-mir-196a-1:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 10 gtgatttaggtagtttcctgttgttggg 37
|||| |||||||||||| ||||||||||
Sbjct: 9 gtgaattaggtagtttcatgttgttggg 36
>27080_eca-mir-196a:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 10 gtgatttaggtagtttcctgttgttggg 37
|||| |||||||||||| ||||||||||
Sbjct: 1 gtgagttaggtagtttcatgttgttggg 28
>27790_mml-mir-196a-1:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 10 gtgatttaggtagtttcctgttgttggg 37
|||| |||||||||||| ||||||||||
Sbjct: 1 gtgaattaggtagtttcatgttgttggg 28
>28323_ggo-mir-196-1:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 10 gtgatttaggtagtttcctgttgttggg 37
|||| |||||||||||| ||||||||||
Sbjct: 1 gtgaattaggtagtttcatgttgttggg 28
>28507_hsa-mir-196a-1:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 10 gtgatttaggtagtttcctgttgttggg 37
|||| |||||||||||| ||||||||||
Sbjct: 1 gtgaattaggtagtttcatgttgttggg 28
>30887_ppy-mir-196-1:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 10 gtgatttaggtagtttcctgttgttggg 37
|||| |||||||||||| ||||||||||
Sbjct: 1 gtgaattaggtagtttcatgttgttggg 28
>33268_bta-mir-196a-1:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 10 gtgatttaggtagtttcctgttgttggg 37
|||| |||||||||||| ||||||||||
Sbjct: 18 gtgaattaggtagtttcatgttgttggg 45
>34347_dre-mir-196a-1:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcctgttgttggg 37
||||||||||||| ||||||||||
Sbjct: 19 tttaggtagtttcatgttgttggg 42
>34348_dre-mir-196a-2:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcctgttgttggg 37
||||||||||||| ||||||||||
Sbjct: 9 tttaggtagtttcatgttgttggg 32
>34351_dre-mir-196d:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 10 gtgatttaggtagtttcctgttgttggg 37
|||||||||||||||| ||||||||||
Sbjct: 2 gtgatttaggtagttttatgttgttggg 29
>25515_pma-mir-196a:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 16 taggtagtttcctgttgttgggg 38
||||||||||| |||||||||||
Sbjct: 11 taggtagtttcatgttgttgggg 33
>27515_age-mir-196:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcctgttgttggg 37
|||||||||||| ||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>27580_lla-mir-196:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcctgttgttggg 37
|||||||||||| ||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>27791_mml-mir-196a-2:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcctgttgttggg 37
|||||||||||| ||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>28324_ggo-mir-196-2:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcctgttgttggg 37
|||||||||||| ||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>28508_hsa-mir-196a-2:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcctgttgttggg 37
|||||||||||| ||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>30112_ppa-mir-196:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcctgttgttggg 37
|||||||||||| ||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>30271_ptr-mir-196a-1:mirbase
Length = 69
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcctgttgttggg 37
|||||||||||| ||||||||||
Sbjct: 5 ttaggtagtttcatgttgttggg 27
>30272_ptr-mir-196a-2:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcctgttgttggg 37
|||||||||||| ||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>30888_ppy-mir-196-2:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcctgttgttggg 37
|||||||||||| ||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>31916_mmu-mir-196a-2:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcctgttgttggg 37
|||||||||||| ||||||||||
Sbjct: 15 ttaggtagtttcatgttgttggg 37
>32783_rno-mir-196a:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcctgttgttggg 37
|||||||||||| ||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>33269_bta-mir-196a-2:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcctgttgttggg 37
|||||||||||| ||||||||||
Sbjct: 15 ttaggtagtttcatgttgttggg 37
>34026_ssc-mir-196a:mirbase
Length = 107
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcctgttgttggg 37
|||||||||||| ||||||||||
Sbjct: 21 ttaggtagtttcatgttgttggg 43
