miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 85.7 bits (43), Expect = 1e-16
Identities = 77/87 (88%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 11 atatgcctggctccctgtatgccatttccagagcccaccagtatcaccggtgacctccgt 70
||||||||||||||||||||||||||| ||||||||||| | | || || || ||| |||
Sbjct: 1 atatgcctggctccctgtatgccatttgcagagcccaccggca-catcgatggccttcgt 59
Query: 71 gaatggcgtatgaggagccaagcatat 97
| |||||||||||||||||| ||||||
Sbjct: 60 ggatggcgtatgaggagccatgcatat 86
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 79.8 bits (40), Expect = 6e-15
Identities = 73/83 (87%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 14 tgcctggctccctgtatgccatttccagagcccaccagtatcaccggtgacctccgtgaa 73
|||||||||||||||||||||||| ||||||||||| | || || || |||||||| |
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccacc--gagcatcgctggcctccgtgga 61
Query: 74 tggcgtatgaggagccaagcata 96
||||||||||||||||| |||||
Sbjct: 62 tggcgtatgaggagccatgcata 84
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 79.8 bits (40), Expect = 6e-15
Identities = 74/84 (88%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 14 tgcctggctccctgtatgccatttccagagcccaccagtatcaccggtgacctccgtgaa 73
|||||||||||||||||||||||| ||||||||| | | ||| || || |||||||| |
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaac-ggatcctcgatggcctccgtgga 62
Query: 74 tggcgtatgaggagccaagcatat 97
||||||||||||||||| ||||||
Sbjct: 63 tggcgtatgaggagccatgcatat 86
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 73.8 bits (37), Expect = 4e-13
Identities = 76/87 (87%), Gaps = 4/87 (4%)
Strand = Plus / Plus
Query: 12 tatgcctggctccctgtatgccatttccagagcccacc-agtatcaccggtgacctccgt 70
|||||||||||||||||||||||| | | ||||||| | |||||| | ||||||||||
Sbjct: 2 tatgcctggctccctgtatgccatatgctgagcccatcgagtatc---gatgacctccgt 58
Query: 71 gaatggcgtatgaggagccaagcatat 97
| |||||||||||||||||| ||||||
Sbjct: 59 ggatggcgtatgaggagccatgcatat 85
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 70 tgaatggcgtatgaggagccaagcatat 97
||||||||||||||||||||||||||||
Sbjct: 62 tgaatggcgtatgaggagccaagcatat 89
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 atatgcctggctccctgtatgccattt 37
|||||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgccattt 27
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 atggcgtatgaggagccaagcatat 97
|||||||||||||||||||||||||
Sbjct: 62 atggcgtatgaggagccaagcatat 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tgcctggctccctgtatgccat 35
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccat 25
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 atggcgtatgaggagccaagcatat 97
|||||||||||||||||||||||||
Sbjct: 62 atggcgtatgaggagccaagcatat 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 tgcctggctccctgtatgccattt 37
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccattt 27
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 atgcctggctccctgtatgccattt 37
|||||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgccattt 27
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 tgcctggctccctgtatgccattt 37
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccattt 27
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 tgcctggctccctgtatgccattt 37
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccattt 27
>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 atatgcctggctccctgtatgcca 34
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 atatgcctggctccctgtatgcca 34
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 atatgcctggctccctgtatgcca 34
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 atatgcctggctccctgtatgcca 34
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 atgcctggctccctgtatgccat 35
|||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgccat 25
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tatgcctggctccctgtatgcca 34
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tatgcctggctccctgtatgcca 34
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
trichocarpa
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tatgcctggctccctgtatgcca 34
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
Length = 89
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tatgcctggctccctgtatgcca 34
|||||||||||||||||||||||
Sbjct: 1 tatgcctggctccctgtatgcca 23
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tatgcctggctccctgtatgcca 34
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;AY551220.1/23-122 4530:Oryza sativa (rice)
Length = 100
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 atatgcctggctccctgtatgcc 33
|||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcc 23
>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
pekinensis
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 atgcctggctccctgtatgcca 34
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 atgcctggctccctgtatgcca 34
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
