miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25997_gga-mir-205a:mirbase
Length = 96
Score = 137 bits (69), Expect = 2e-33
Identities = 85/89 (95%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 13 atccatgggtttctgttgtccttcattccaccggagtctgtttcgtacctaatcagattt 72
||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 5 atccatgggtt-ctgttgtccttcattccaccggagtctgtctcgtacctaaccagattt 63
Query: 73 cagtggagtgaagcacaagaggcatggag 101
||||||||||||||||||||| |||||||
Sbjct: 64 cagtggagtgaagcacaagagacatggag 92
>25827_xtr-mir-205a:mirbase
Length = 86
Score = 115 bits (58), Expect = 7e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 29 tgtccttcattccaccggagtctgtttcgtacctaatcagatttcagtggagtgaagcac 88
||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct: 14 tgtccttcattccaccggagtctgtctcatacataatcagatttcagtggagtgaagcac 73
Query: 89 aagaggcatg 98
||||||||||
Sbjct: 74 aagaggcatg 83
>27423_mdo-mir-205a:mirbase
Length = 72
Score = 109 bits (55), Expect = 4e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 28 ttgtccttcattccaccggagtctgtttcgtacctaatcagatttcagtggagtgaagca 87
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct: 2 ttgtccttcattccaccggagtctgtctcatatctaatcagatttcagtggagtgaagca 61
Query: 88 caagaggcatg 98
||||||||||
Sbjct: 62 taagaggcatg 72
>25668_xla-mir-205:mirbase
Length = 86
Score = 107 bits (54), Expect = 2e-24
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 29 tgtccttcattccaccggagtctgtttcgtacctaatcagatttcagtggagtgaagcac 88
||||||||||||||||||||||||| || ||| ||||||||||||||| |||||||||||
Sbjct: 14 tgtccttcattccaccggagtctgtctcatacataatcagatttcagtagagtgaagcac 73
Query: 89 aagaggcatg 98
||||||||||
Sbjct: 74 aagaggcatg 83
>27583_lla-mir-205:mirbase
Length = 110
Score = 97.6 bits (49), Expect = 2e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 13 atccatgggtttctgttgtccttcattccaccggagtctgtttcgtacctaatcagattt 72
||||||| | |||| |||||||||||||||||||||||||| || |||| || |||||||
Sbjct: 16 atccatgtgcttctcttgtccttcattccaccggagtctgtctcatacccaaccagattt 75
Query: 73 cagtggagtgaagcacaagaggcatggag 101
||||||||||||| || |||||||||||
Sbjct: 76 cagtggagtgaagttcaggaggcatggag 104
>27802_mml-mir-205:mirbase
Length = 110
Score = 97.6 bits (49), Expect = 2e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 13 atccatgggtttctgttgtccttcattccaccggagtctgtttcgtacctaatcagattt 72
||||||| | |||| |||||||||||||||||||||||||| || |||| || |||||||
Sbjct: 16 atccatgtgcttctcttgtccttcattccaccggagtctgtctcatacccaaccagattt 75
Query: 73 cagtggagtgaagcacaagaggcatggag 101
||||||||||||| || |||||||||||
Sbjct: 76 cagtggagtgaagttcaggaggcatggag 104
>28233_mne-mir-205:mirbase
Length = 110
Score = 97.6 bits (49), Expect = 2e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 13 atccatgggtttctgttgtccttcattccaccggagtctgtttcgtacctaatcagattt 72
||||||| | |||| |||||||||||||||||||||||||| || |||| || |||||||
Sbjct: 16 atccatgtgcttctcttgtccttcattccaccggagtctgtctcatacccaaccagattt 75
Query: 73 cagtggagtgaagcacaagaggcatggag 101
||||||||||||| || |||||||||||
Sbjct: 76 cagtggagtgaagttcaggaggcatggag 104
>28329_ggo-mir-205:mirbase
Length = 110
Score = 97.6 bits (49), Expect = 2e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 13 atccatgggtttctgttgtccttcattccaccggagtctgtttcgtacctaatcagattt 72
||||||| | |||| |||||||||||||||||||||||||| || |||| || |||||||
Sbjct: 16 atccatgtgcttctcttgtccttcattccaccggagtctgtctcatacccaaccagattt 75
Query: 73 cagtggagtgaagcacaagaggcatggag 101
||||||||||||| || |||||||||||
Sbjct: 76 cagtggagtgaagttcaggaggcatggag 104
>28524_hsa-mir-205:mirbase
Length = 110
Score = 97.6 bits (49), Expect = 2e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 13 atccatgggtttctgttgtccttcattccaccggagtctgtttcgtacctaatcagattt 72
||||||| | |||| |||||||||||||||||||||||||| || |||| || |||||||
Sbjct: 16 atccatgtgcttctcttgtccttcattccaccggagtctgtctcatacccaaccagattt 75
Query: 73 cagtggagtgaagcacaagaggcatggag 101
||||||||||||| || |||||||||||
Sbjct: 76 cagtggagtgaagttcaggaggcatggag 104
>30117_ppa-mir-205:mirbase
Length = 110
Score = 97.6 bits (49), Expect = 2e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 13 atccatgggtttctgttgtccttcattccaccggagtctgtttcgtacctaatcagattt 72
||||||| | |||| |||||||||||||||||||||||||| || |||| || |||||||
Sbjct: 16 atccatgtgcttctcttgtccttcattccaccggagtctgtctcatacccaaccagattt 75
Query: 73 cagtggagtgaagcacaagaggcatggag 101
||||||||||||| || |||||||||||
Sbjct: 76 cagtggagtgaagttcaggaggcatggag 104
>30283_ptr-mir-205:mirbase
Length = 110
Score = 97.6 bits (49), Expect = 2e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 13 atccatgggtttctgttgtccttcattccaccggagtctgtttcgtacctaatcagattt 72
||||||| | |||| |||||||||||||||||||||||||| || |||| || |||||||
Sbjct: 16 atccatgtgcttctcttgtccttcattccaccggagtctgtctcatacccaaccagattt 75
Query: 73 cagtggagtgaagcacaagaggcatggag 101
||||||||||||| || |||||||||||
Sbjct: 76 cagtggagtgaagttcaggaggcatggag 104
>30901_ppy-mir-205:mirbase
Length = 109
Score = 97.6 bits (49), Expect = 2e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 13 atccatgggtttctgttgtccttcattccaccggagtctgtttcgtacctaatcagattt 72
||||||| | |||| |||||||||||||||||||||||||| || |||| || |||||||
Sbjct: 16 atccatgtgcttctcttgtccttcattccaccggagtctgtctcatacccaaccagattt 75
Query: 73 cagtggagtgaagcacaagaggcatggag 101
||||||||||||| || |||||||||||
Sbjct: 76 cagtggagtgaagttcaggaggcatggag 104
>26765_cfa-mir-205:mirbase
Length = 69
Score = 91.7 bits (46), Expect = 1e-19
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 28 ttgtccttcattccaccggagtctgtttcgtacctaatcagatttcagtggagtgaag 85
|||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct: 4 ttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaag 61
>33283_bta-mir-205:mirbase
Length = 69
Score = 91.7 bits (46), Expect = 1e-19
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 28 ttgtccttcattccaccggagtctgtttcgtacctaatcagatttcagtggagtgaag 85
|||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct: 4 ttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaag 61
>27518_age-mir-205:mirbase
Length = 109
Score = 89.7 bits (45), Expect = 4e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 13 atccatgggtttctgttgtccttcattccaccggagtctgtttcgtacctaatcagattt 72
||||||| | |||| |||||||||||||||||||||||||| || |||| || |||||||
Sbjct: 16 atccatgtgcttctcttgtccttcattccaccggagtctgtctcatacccaaccagattt 75
Query: 73 cagtggagtgaag 85
|||||||||||||
Sbjct: 76 cagtggagtgaag 88
>34035_ssc-mir-205:mirbase
Length = 69
Score = 85.7 bits (43), Expect = 6e-18
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 28 ttgtccttcattccaccggagtctgtttcgtacctaatcagatttcagtggagtgaagc 86
|||||||||||||||||||||||||| || |||| || |||||||||||||||||||||
Sbjct: 4 ttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaagc 62
>27091_eca-mir-205:mirbase
Length = 69
Score = 83.8 bits (42), Expect = 2e-17
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 28 ttgtccttcattccaccggagtctgtttcgtacctaatcagatttcagtggagtgaag 85
|||||||||||||||||||||||||| || |||| || ||||||||||||||||||||
Sbjct: 4 ttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaag 61
>32795_rno-mir-205:mirbase
Length = 108
Score = 73.8 bits (37), Expect = 2e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 29 tgtccttcattccaccggagtctgtttcgtacctaatcagatttcagtggagtgaagcac 88
||||||||||||||||||||||||| | | || || ||||||||||||||||||||| |
Sbjct: 31 tgtccttcattccaccggagtctgtcttatgcc-aaccagatttcagtggagtgaagctc 89
Query: 89 aagaggcatggag 101
| |||||||||||
Sbjct: 90 aggaggcatggag 102
>31931_mmu-mir-205:mirbase
Length = 68
Score = 61.9 bits (31), Expect = 9e-11
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 28 ttgtccttcattccaccggagtctgtttcgtacctaatcagatttcagtggagtgaagc 86
|||||||||||||||||||||||||| | | || || |||||||||||||||||||||
Sbjct: 4 ttgtccttcattccaccggagtctgtcttatgcc-aaccagatttcagtggagtgaagc 61
>25524_pma-mir-205b:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 25 ctgttgtccttcattccaccggagtctgtt 54
|||||| |||||||||||||||||||||||
Sbjct: 1 ctgttgcccttcattccaccggagtctgtt 30
>25523_pma-mir-205a:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 gtccttcattccaccggagtctgt 53
||||||||||||||||||||||||
Sbjct: 9 gtccttcattccaccggagtctgt 32
>34363_dre-mir-205:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 49/56 (87%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 31 tccttcattccaccggagtctgtttcgtacct-aatcagatttcagtggagtgaag 85
||||||||||||||||||||||| | || | |||||||||||||||| ||||||
Sbjct: 19 tccttcattccaccggagtctgtgtagttgttcaatcagatttcagtggtgtgaag 74
>34633_fru-mir-205:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 1e-06
Identities = 49/56 (87%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 31 tccttcattccaccggagtctgt-ttcgtacctaatcagatttcagtggagtgaag 85
||||||||||||||||||||||| | ||| ||| ||||||||||||| ||||||
Sbjct: 10 tccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtgtgaag 65
>34781_tni-mir-205:mirbase
Length = 66
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 tccttcattccaccggagtctgt 53
|||||||||||||||||||||||
Sbjct: 3 tccttcattccaccggagtctgt 25
