miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26010_gga-mir-221:mirbase
Length = 99
Score = 141 bits (71), Expect = 1e-34
Identities = 86/91 (94%)
Strand = Plus / Plus
Query: 3 caggtttgaggcatgaacctggcatacaatgtagaattctgtatttgttaagcaacagct 62
|||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 8 caggtttggggcatgaacctggcatacaatgtagatttctgtgtttgttaagcaacagct 67
Query: 63 acattgtctgctgggtttcaagctacctgga 93
||||||||||||||||||| |||| ||||||
Sbjct: 68 acattgtctgctgggtttccagctgcctgga 98
>31951_mmu-mir-221:mirbase
Length = 95
Score = 133 bits (67), Expect = 2e-32
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 3 caggtttgaggcatgaacctggcatacaatgtagaattctgtatttgttaagcaacagct 62
||||| || |||||||||||||||||||||||||| |||||| ||||||| |||||||||
Sbjct: 4 caggtctggggcatgaacctggcatacaatgtagatttctgtgtttgttaggcaacagct 63
Query: 63 acattgtctgctgggtttcaagctacctgga 93
|||||||||||||||||||| ||||||||||
Sbjct: 64 acattgtctgctgggtttcaggctacctgga 94
>32817_rno-mir-221:mirbase
Length = 109
Score = 133 bits (67), Expect = 2e-32
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 3 caggtttgaggcatgaacctggcatacaatgtagaattctgtatttgttaagcaacagct 62
||||| || |||||||||||||||||||||||||| |||||| ||||||| |||||||||
Sbjct: 9 caggtctggggcatgaacctggcatacaatgtagatttctgtgtttgttaggcaacagct 68
Query: 63 acattgtctgctgggtttcaagctacctgga 93
|||||||||||||||||||| ||||||||||
Sbjct: 69 acattgtctgctgggtttcaggctacctgga 99
>33301_bta-mir-221:mirbase
Length = 110
Score = 131 bits (66), Expect = 1e-31
Identities = 78/82 (95%)
Strand = Plus / Plus
Query: 12 ggcatgaacctggcatacaatgtagaattctgtatttgttaagcaacagctacattgtct 71
|||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||
Sbjct: 18 ggcatgaacctggcatacaatgtagatttctgtgtttgttgagcaacagctacattgtct 77
Query: 72 gctgggtttcaagctacctgga 93
||||||||||| ||||||||||
Sbjct: 78 gctgggtttcaggctacctgga 99
>27819_mml-mir-221:mirbase
Length = 110
Score = 125 bits (63), Expect = 6e-30
Identities = 84/91 (92%)
Strand = Plus / Plus
Query: 3 caggtttgaggcatgaacctggcatacaatgtagaattctgtatttgttaagcaacagct 62
||||| || |||||||||||||||||||||||||| |||||| || |||| |||||||||
Sbjct: 9 caggtctggggcatgaacctggcatacaatgtagatttctgtgttcgttaggcaacagct 68
Query: 63 acattgtctgctgggtttcaagctacctgga 93
|||||||||||||||||||| ||||||||||
Sbjct: 69 acattgtctgctgggtttcaggctacctgga 99
>28336_ggo-mir-221:mirbase
Length = 110
Score = 125 bits (63), Expect = 6e-30
Identities = 84/91 (92%)
Strand = Plus / Plus
Query: 3 caggtttgaggcatgaacctggcatacaatgtagaattctgtatttgttaagcaacagct 62
||||| || |||||||||||||||||||||||||| |||||| || |||| |||||||||
Sbjct: 9 caggtctggggcatgaacctggcatacaatgtagatttctgtgttcgttaggcaacagct 68
Query: 63 acattgtctgctgggtttcaagctacctgga 93
|||||||||||||||||||| ||||||||||
Sbjct: 69 acattgtctgctgggtttcaggctacctgga 99
>28542_hsa-mir-221:mirbase
Length = 110
Score = 125 bits (63), Expect = 6e-30
Identities = 84/91 (92%)
Strand = Plus / Plus
Query: 3 caggtttgaggcatgaacctggcatacaatgtagaattctgtatttgttaagcaacagct 62
||||| || |||||||||||||||||||||||||| |||||| || |||| |||||||||
Sbjct: 9 caggtctggggcatgaacctggcatacaatgtagatttctgtgttcgttaggcaacagct 68
Query: 63 acattgtctgctgggtttcaagctacctgga 93
|||||||||||||||||||| ||||||||||
Sbjct: 69 acattgtctgctgggtttcaggctacctgga 99
>30123_ppa-mir-221:mirbase
Length = 110
Score = 125 bits (63), Expect = 6e-30
Identities = 84/91 (92%)
Strand = Plus / Plus
Query: 3 caggtttgaggcatgaacctggcatacaatgtagaattctgtatttgttaagcaacagct 62
||||| || |||||||||||||||||||||||||| |||||| || |||| |||||||||
Sbjct: 9 caggtctggggcatgaacctggcatacaatgtagatttctgtgttcgttaggcaacagct 68
Query: 63 acattgtctgctgggtttcaagctacctgga 93
|||||||||||||||||||| ||||||||||
Sbjct: 69 acattgtctgctgggtttcaggctacctgga 99
>30300_ptr-mir-221:mirbase
Length = 109
Score = 125 bits (63), Expect = 6e-30
Identities = 84/91 (92%)
Strand = Plus / Plus
Query: 3 caggtttgaggcatgaacctggcatacaatgtagaattctgtatttgttaagcaacagct 62
||||| || |||||||||||||||||||||||||| |||||| || |||| |||||||||
Sbjct: 9 caggtctggggcatgaacctggcatacaatgtagatttctgtgttcgttaggcaacagct 68
Query: 63 acattgtctgctgggtttcaagctacctgga 93
|||||||||||||||||||| ||||||||||
Sbjct: 69 acattgtctgctgggtttcaggctacctgga 99
>30916_ppy-mir-221:mirbase
Length = 110
Score = 125 bits (63), Expect = 6e-30
Identities = 84/91 (92%)
Strand = Plus / Plus
Query: 3 caggtttgaggcatgaacctggcatacaatgtagaattctgtatttgttaagcaacagct 62
||||| || |||||||||||||||||||||||||| |||||| || |||| |||||||||
Sbjct: 9 caggtctggggcatgaacctggcatacaatgtagatttctgtgttcgttaggcaacagct 68
Query: 63 acattgtctgctgggtttcaagctacctgga 93
|||||||||||||||||||| ||||||||||
Sbjct: 69 acattgtctgctgggtttcaggctacctgga 99
>27106_eca-mir-221:mirbase
Length = 110
Score = 117 bits (59), Expect = 1e-27
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 3 caggtttgaggcatgaacctggcatacaatgtagaattctgtatttgttaagcaacagct 62
||||| || |||||||||||||||||||||||||| |||||| ||| || |||||||||
Sbjct: 9 caggtctggggcatgaacctggcatacaatgtagatttctgtgtttcttgggcaacagct 68
Query: 63 acattgtctgctgggtttcaagctacctgga 93
|||||||||||||||||||| ||||||||||
Sbjct: 69 acattgtctgctgggtttcaggctacctgga 99
>27434_mdo-mir-221:mirbase
Length = 74
Score = 115 bits (58), Expect = 6e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 13 gcatgaacctggcatacaatgtagaattctgtatttgttaagcaacagctacattgtctg 72
|||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||
Sbjct: 1 gcatgaacctggcatacaatgtagaattctgtgtttattaagtaacagctacattgtctg 60
Query: 73 ctgggtttca 82
||||||||||
Sbjct: 61 ctgggtttca 70
>26517_tgu-mir-221:mirbase
Length = 73
Score = 113 bits (57), Expect = 2e-26
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 19 acctggcatacaatgtagaattctgtatttgttaagcaacagctacattgtctgctgggt 78
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 acctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctgggt 60
Query: 79 ttcaagctacctg 91
||| |||| ||||
Sbjct: 61 ttccagctgcctg 73
>34046_ssc-mir-221:mirbase
Length = 70
Score = 101 bits (51), Expect = 9e-23
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 16 tgaacctggcatacaatgtagaattctgtatttgttaagcaacagctacattgtctgctg 75
|||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||
Sbjct: 1 tgaacctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctg 60
Query: 76 ggtttca 82
|||||||
Sbjct: 61 ggtttca 67
>26782_cfa-mir-221:mirbase
Length = 62
Score = 91.7 bits (46), Expect = 8e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 19 acctggcatacaatgtagaattctgtatttgttaagcaacagctacattgtctgctgggt 78
||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||
Sbjct: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
Query: 79 tt 80
||
Sbjct: 61 tt 62
>25840_xtr-mir-221:mirbase
Length = 93
Score = 87.7 bits (44), Expect = 1e-18
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 19 acctggcatacaatgtagaattctgtatttgttaagcaacagctacattgtctgctgggt 78
|||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||
Sbjct: 19 acctggcatacaatgtagaaaactgtgtttgcaaagcaacagctacattgtctgctgggt 78
Query: 79 ttca 82
||||
Sbjct: 79 ttca 82
>34381_dre-mir-221:mirbase
Length = 93
Score = 54.0 bits (27), Expect = 2e-08
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 16 tgaacctggcatacaatgtagaattctgtatttgttaagcaacagctacattgtctgctg 75
|||||||||||||||||||||| |||||| | | | |||||||||||||||||||
Sbjct: 5 tgaacctggcatacaatgtagatttctgtgtggtactatctacagctacattgtctgctg 64
Query: 76 ggtttca 82
|||||||
Sbjct: 65 ggtttca 71
>25534_pma-mir-221:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 54 gcaacagctacattgtctgctgggtt 79
||||||||||||||||||||||||||
Sbjct: 46 gcaacagctacattgtctgctgggtt 71
>34645_fru-mir-221:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 16 tgaacctggcatacaatgtagaattctgt 44
|||||||||||||||||||||| ||||||
Sbjct: 3 tgaacctggcatacaatgtagatttctgt 31
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 acagctacattgtctgctgggtttc 81
|||||||||||||||||||||||||
Sbjct: 45 acagctacattgtctgctgggtttc 69
>34793_tni-mir-221:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 16 tgaacctggcatacaatgtagaattctgt 44
|||||||||||||||||||||| ||||||
Sbjct: 3 tgaacctggcatacaatgtagatttctgt 31
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 acagctacattgtctgctgggtttc 81
|||||||||||||||||||||||||
Sbjct: 45 acagctacattgtctgctgggtttc 69
