miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32676_rno-mir-24-2:mirbase
Length = 108
Score = 174 bits (88), Expect = 8e-45
Identities = 104/108 (96%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 1 gcctctctccgggctccgcctcccgtgcctactgagctgaaacagttgattccagtgcac 60
||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcctctccctgggctccgcctcctgtgcctactgagctgaaacagttgattccagtgcac 60
Query: 61 tggctcagttcagcaggaacaggagtccagccccc-taggagctggca 107
||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 61 tggctcagttcagcaggaacaggagtccagcccccataggagctggca 108
>32513_mmu-mir-3074-2:mirbase
Length = 83
Score = 165 bits (83), Expect = 8e-42
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 11 gggctccgcctcccgtgcctactgagctgaaacagttgattccagtgcactggctcagtt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 gggctccgcctcccgtgcctactgagctgaaacagttgattccagtgcactggctcagtt 24
Query: 71 cagcaggaacaggagtccagccc 93
|||||||||||||||||||||||
Sbjct: 23 cagcaggaacaggagtccagccc 1
>32514_mmu-mir-3074-2:mirbase
Length = 83
Score = 165 bits (83), Expect = 8e-42
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 11 gggctccgcctcccgtgcctactgagctgaaacagttgattccagtgcactggctcagtt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 gggctccgcctcccgtgcctactgagctgaaacagttgattccagtgcactggctcagtt 24
Query: 71 cagcaggaacaggagtccagccc 93
|||||||||||||||||||||||
Sbjct: 23 cagcaggaacaggagtccagccc 1
>28270_ggo-mir-24:mirbase
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 18 gcctcccgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagca 75
||||||||||||||||||||||||||| |||| || || ||||||||||||||||||
Sbjct: 5 gcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttcagca 64
Query: 76 ggaacagg 83
||||||||
Sbjct: 65 ggaacagg 72
>28378_hsa-mir-24-2:mirbase
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 18 gcctcccgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagca 75
||||||||||||||||||||||||||| |||| || || ||||||||||||||||||
Sbjct: 5 gcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttcagca 64
Query: 76 ggaacagg 83
||||||||
Sbjct: 65 ggaacagg 72
>30057_ppa-mir-24-2:mirbase
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 18 gcctcccgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagca 75
||||||||||||||||||||||||||| |||| || || ||||||||||||||||||
Sbjct: 5 gcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttcagca 64
Query: 76 ggaacagg 83
||||||||
Sbjct: 65 ggaacagg 72
>30164_ptr-mir-24-2:mirbase
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 18 gcctcccgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagca 75
||||||||||||||||||||||||||| |||| || || ||||||||||||||||||
Sbjct: 5 gcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttcagca 64
Query: 76 ggaacagg 83
||||||||
Sbjct: 65 ggaacagg 72
>30769_ppy-mir-24-2:mirbase
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 18 gcctcccgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagca 75
||||||||||||||||||||||||||| |||| || || ||||||||||||||||||
Sbjct: 5 gcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttcagca 64
Query: 76 ggaacagg 83
||||||||
Sbjct: 65 ggaacagg 72
>33148_bta-mir-24-2:mirbase
Length = 72
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 18 gcctcccgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagca 75
||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct: 5 gcctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttcagca 64
Query: 76 ggaacagg 83
||||||||
Sbjct: 65 ggaacagg 72
>27668_mml-mir-24-2:mirbase
Length = 73
Score = 67.9 bits (34), Expect = 1e-12
Identities = 61/69 (88%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 18 gcctcccgtgcctactgagctgaa--acagttgattccagtgcactggctcagttcagca 75
|||||||||||||||||||||||| ||||||| || | ||||||||||||||||||
Sbjct: 5 gcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttcagca 64
Query: 76 ggaacagga 84
|||||||||
Sbjct: 65 ggaacagga 73
>28184_mne-mir-24-2:mirbase
Length = 73
Score = 67.9 bits (34), Expect = 1e-12
Identities = 61/69 (88%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 18 gcctcccgtgcctactgagctgaa--acagttgattccagtgcactggctcagttcagca 75
|||||||||||||||||||||||| ||||||| || | ||||||||||||||||||
Sbjct: 5 gcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttcagca 64
Query: 76 ggaacagga 84
|||||||||
Sbjct: 65 ggaacagga 73
>33928_ssc-mir-24-1:mirbase
Length = 72
Score = 65.9 bits (33), Expect = 6e-12
Identities = 60/68 (88%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 18 gcctcccgtgcctactgagctgaa--acagttgattccagtgcactggctcagttcagca 75
|||||||||||||||||||||||| |||||||||| | |||||||||||||||||
Sbjct: 5 gcctcccgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagca 64
Query: 76 ggaacagg 83
||||||||
Sbjct: 65 ggaacagg 72
>32511_mmu-mir-3074-1:mirbase
Length = 85
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 58 cactggctcagttcagcaggaacaggagtccagccc 93
|||||||||||||||||||||||||||||| |||||
Sbjct: 36 cactggctcagttcagcaggaacaggagtcgagccc 1
>32512_mmu-mir-3074-1:mirbase
Length = 85
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 58 cactggctcagttcagcaggaacaggagtccagccc 93
|||||||||||||||||||||||||||||| |||||
Sbjct: 36 cactggctcagttcagcaggaacaggagtcgagccc 1
>33024_rno-mir-3074:mirbase
Length = 117
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 58 cactggctcagttcagcaggaacaggagtccagccc 93
|||||||||||||||||||||||||||||| |||||
Sbjct: 49 cactggctcagttcagcaggaacaggagtcgagccc 14
>26413_tgu-mir-24:mirbase
Length = 132
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggagtccagcc 92
|||||||||||||||||||||||||||||| ||||
Sbjct: 98 cactggctcagttcagcaggaacaggagtcgagcc 132
>29230_hsa-mir-3074:mirbase
Length = 81
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 58 cactggctcagttcagcaggaacaggagtc 87
||||||||||||||||||||||||||||||
Sbjct: 34 cactggctcagttcagcaggaacaggagtc 5
>29231_hsa-mir-3074:mirbase
Length = 81
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 58 cactggctcagttcagcaggaacaggagtc 87
||||||||||||||||||||||||||||||
Sbjct: 34 cactggctcagttcagcaggaacaggagtc 5
>33929_ssc-mir-24-2:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggagtc 87
||||||||||||||||||||||||||||||
Sbjct: 49 cactggctcagttcagcaggaacaggagtc 78
>34230_dre-mir-24-3:mirbase
Length = 142
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggagtc 87
||||||||||||||||||||||||||||||
Sbjct: 77 cactggctcagttcagcaggaacaggagtc 106
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 gcctcccgtgcctactgagctga 40
|||||||||||||||||||||||
Sbjct: 37 gcctcccgtgcctactgagctga 59
>34709_tni-mir-24-1:mirbase
Length = 70
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggagtc 87
||||||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacaggagtc 70
>26961_eca-mir-24:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 1e-09
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 ctcccgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagcagg 77
||||||||||||||||||||||||| |||| || | |||||||||||||||||||
Sbjct: 1 ctcccgtgcctactgagctgaaacacagttggtttgtgcagactggctcagttcagcagg 60
Query: 78 aacaggag 85
||||||||
Sbjct: 61 aacaggag 68
>27346_mdo-mir-24-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 59 actggctcagttcagcaggaacaggagtc 87
|||||||||||||||||||||||||||||
Sbjct: 44 actggctcagttcagcaggaacaggagtc 72
>31442_oan-mir-24:mirbase
Length = 84
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggagt 86
|||||||||||||||||||||||||||||
Sbjct: 49 cactggctcagttcagcaggaacaggagt 77
>34228_dre-mir-24-1:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggagt 86
|||||||||||||||||||||||||||||
Sbjct: 46 cactggctcagttcagcaggaacaggagt 74
>25716_xtr-mir-24a:mirbase
Length = 67
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggag 85
||||||||||||||||||||||||||||
Sbjct: 40 cactggctcagttcagcaggaacaggag 67
>25717_xtr-mir-24a:mirbase
Length = 67
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggag 85
||||||||||||||||||||||||||||
Sbjct: 40 cactggctcagttcagcaggaacaggag 67
>26962_eca-mir-24-2:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggag 85
||||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacaggag 68
>27667_mml-mir-24-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggag 85
||||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacaggag 68
>28183_mne-mir-24-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggag 85
||||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacaggag 68
>28377_hsa-mir-24-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggag 85
||||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacaggag 68
>30056_ppa-mir-24-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggag 85
||||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacaggag 68
>30163_ptr-mir-24-1:mirbase
Length = 67
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggag 85
||||||||||||||||||||||||||||
Sbjct: 40 cactggctcagttcagcaggaacaggag 67
>30768_ppy-mir-24-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggag 85
||||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacaggag 68
>31791_mmu-mir-24-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggag 85
||||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacaggag 68
>32675_rno-mir-24-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggag 85
||||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacaggag 68
>33147_bta-mir-24-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacaggag 85
||||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacaggag 68
>34561_fru-mir-24-1:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 59 actggctcagttcagcaggaacaggagt 86
||||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggagt 79
>34562_fru-mir-24-1:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 59 actggctcagttcagcaggaacaggagt 86
||||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggagt 79
>25444_pma-mir-24:mirbase
Length = 94
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 57 gcactggctcagttcagcaggaacaggagtc 87
|||||||||||||||||||||||||| ||||
Sbjct: 54 gcactggctcagttcagcaggaacagaagtc 84
>25908_gga-mir-24:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 actggctcagttcagcaggaacaggag 85
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>26640_cfa-mir-24-2:mirbase
Length = 62
Score = 54.0 bits (27), Expect = 2e-08
Identities = 54/62 (87%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 24 cgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagcaggaaca 81
||||||||||||||||||||| ||||||| | |||||||||||||||||||||||
Sbjct: 1 cgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaaca 60
Query: 82 gg 83
||
Sbjct: 61 gg 62
>26639_cfa-mir-24-1:mirbase
Length = 62
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcaggaacagg 83
||||||||||||||||||||||||||
Sbjct: 37 cactggctcagttcagcaggaacagg 62
>34229_dre-mir-24-2:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 actggctcagttcagcaggaacagg 83
|||||||||||||||||||||||||
Sbjct: 49 actggctcagttcagcaggaacagg 73
>34231_dre-mir-24-4:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 ctggctcagttcagcaggaacagg 83
||||||||||||||||||||||||
Sbjct: 55 ctggctcagttcagcaggaacagg 78
>34563_fru-mir-24-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 ctggctcagttcagcaggaacagg 83
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>34710_tni-mir-24-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 ctggctcagttcagcaggaacagg 83
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>27345_mdo-mir-24-1:mirbase
Length = 57
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 cactggctcagttcagcagga 78
|||||||||||||||||||||
Sbjct: 37 cactggctcagttcagcagga 57
