miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00644;mir-27;BAAF04040483.1/6623-6705 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 119 bits (60), Expect = 5e-27
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 6 cagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggctaagtt 65
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 13 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 72
Query: 66 ctgcacct 73
||||||||
Sbjct: 73 ctgcacct 80
>RF00644;mir-27;AAFR03027068.1/11019-11101 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 105 bits (53), Expect = 7e-23
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 1 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 60
|||||||||||||||| |||||||||||||| | || ||||| |||||||||||||||||
Sbjct: 8 aggtgcagagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggct 67
Query: 61 aagttctgcacct 73
|||||||||||||
Sbjct: 68 aagttctgcacct 80
>RF00644;mir-27;AAVX01114775.1/589-508 7868:Callorhinchus milii
(ghost shark)
Length = 82
Score = 105 bits (53), Expect = 7e-23
Identities = 69/73 (94%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 60
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 8 aggtgcagagcttagctgattggtgaacagtgatt-gttgttgctttgttcacagtggct 66
Query: 61 aagttctgcacct 73
|||||||||||||
Sbjct: 67 aagttctgcacct 79
>RF00644;mir-27;AAPN01152921.1/1247-1165 9258:Ornithorhynchus
anatinus (platypus)
Length = 83
Score = 89.7 bits (45), Expect = 4e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 5 gcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggctaagt 64
|||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 12 gcagagcttagctgattggtgaacagtgattgctggactctttgttcacagtggctaagt 71
Query: 65 tctgc 69
|||||
Sbjct: 72 tctgc 76
>RF00644;mir-27;CR847548.8/136623-136702 7955:Danio rerio
(zebrafish)
Length = 80
Score = 87.7 bits (44), Expect = 2e-17
Identities = 64/70 (91%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 1 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 60
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 8 aggtgcagagcttagctgattggtgaacagtgattg---aactctttgttcacagtggct 64
Query: 61 aagttctgca 70
||||||||||
Sbjct: 65 aagttctgca 74
>RF00644;mir-27;CT027840.6/2845-2927 7955:Danio rerio (zebrafish)
Length = 83
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 45 tttgttcacagtggctaagttctgcacc 72
||||||||||||||||||||||| ||||
Sbjct: 52 tttgttcacagtggctaagttcttcacc 79
>RF00644;mir-27;AAVX01257813.1/610-525 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttctgcacct 73
|||||||||||||||||||| ||||||
Sbjct: 57 tgttcacagtggctaagttccgcacct 83
>RF00644;mir-27;AANN01357153.1/1239-1159 9365:Erinaceus europaeus
(western European hedgehog)
Length = 81
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 ttgttcacagtggctaagttc 66
|||||||||||||||||||||
Sbjct: 51 ttgttcacagtggctaagttc 71
>RF00644;mir-27;CAAB01004552.1/601-519 31033:Takifugu rubripes
Length = 83
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 ttgttcacagtggctaagttc 66
|||||||||||||||||||||
Sbjct: 53 ttgttcacagtggctaagttc 73
>RF00644;mir-27;AANH01005391.1/487407-487325 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 ttgttcacagtggctaagttc 66
|||||||||||||||||||||
Sbjct: 53 ttgttcacagtggctaagttc 73
>RF00644;mir-27;BAAF04082680.1/4929-4846 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 ttgttcacagtggctaagttc 66
|||||||||||||||||||||
Sbjct: 54 ttgttcacagtggctaagttc 74
>RF00644;mir-27;BAAF04073622.1/5313-5395 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 ttgttcacagtggctaagttc 66
|||||||||||||||||||||
Sbjct: 53 ttgttcacagtggctaagttc 73
