miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00129;mir-103;AADN02027745.1/21215-21292 9031:Gallus gallus
(chicken)
Length = 78
Score = 143 bits (72), Expect = 4e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 8 tgctttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tgctttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagg 63
Query: 68 gctatcaaagca 79
||||||||||||
Sbjct: 64 gctatcaaagca 75
>RF00129;mir-103;BAAE01010024.1/828-751 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 105 bits (53), Expect = 9e-23
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 6 tgtgctttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtaca 65
|||||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 2 tgtgctgtgagcttctttacagtgttgccttgtggcatggcgatcaagcagcattgtaca 61
Query: 66 gggctatca 74
|||||||||
Sbjct: 62 gggctatca 70
>RF00129;mir-103;AAVX01541574.1/765-688 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 101 bits (51), Expect = 1e-21
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 16 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctatcaa 75
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgttgccttgtagcttggagatcaagcagcattgtacagggctatcaa 71
Query: 76 agc 78
|||
Sbjct: 72 agc 74
>RF00129;mir-103;AAGU02403797.1/4408-4485 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 10 ctttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggc 69
|||||||||||||||||||| |||||||| |||| || |||||||||||||||||||||
Sbjct: 6 ctttcagcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggc 65
Query: 70 tatcaaag 77
||| ||||
Sbjct: 66 tatgaaag 73
>RF00129;mir-103;AADN02048857.1/398-321 9031:Gallus gallus
(chicken)
Length = 78
Score = 83.8 bits (42), Expect = 3e-16
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 5 ctgtgctttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtac 64
||||||||||||||||||||||||| |||||||| || | | ||||||||||||||||
Sbjct: 1 ctgtgctttcagcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtac 60
Query: 65 agggctatcaaagcacag 82
|||||||| |||| ||||
Sbjct: 61 agggctatgaaagaacag 78
>RF00129;mir-103;AAVX01046194.1/322-245 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 79.8 bits (40), Expect = 5e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 7 gtgctttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacag 66
|||| ||| |||||||||||||| ||||||||| | || || ||||||||||||||||||
Sbjct: 3 gtgccttcggcttctttacagtgctgccttgtgacgtgaagatcaagcagcattgtacag 62
Query: 67 ggctatcaaagcacag 82
|||||| || ||||||
Sbjct: 63 ggctatgaaggcacag 78
>RF00129;mir-103;AAVX01197460.1/556-479 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 73.8 bits (37), Expect = 3e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 5 ctgtgctttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtac 64
||||| ||||||||||||||||||| || ||||| |||| | ||||||||||||||||
Sbjct: 1 ctgtgttttcagcttctttacagtgctgacttgtagcatccggatcaagcagcattgtac 60
Query: 65 agggctatcaaag 77
|||||||| ||||
Sbjct: 61 agggctatgaaag 73
>RF00129;mir-103;BX511087.12/72494-72571 7955:Danio rerio
(zebrafish)
Length = 78
Score = 69.9 bits (35), Expect = 5e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 16 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggct 70
|||||| |||||||||||||||| || ||| | ||||||||||||||||||||||
Sbjct: 12 gcttctctacagtgttgccttgtagcctggtgatcaagcagcattgtacagggct 66
>RF00129;mir-103;ABRO01336156.1/1674-1751 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 78
Score = 65.9 bits (33), Expect = 8e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 16 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 72
|||||| ||||||| |||||||| ||||| | ||||||||||||||||||||||||
Sbjct: 12 gcttctctacagtgctgccttgttgcatgtggatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AADN02035922.1/14217-14140 9031:Gallus gallus
(chicken)
Length = 78
Score = 65.9 bits (33), Expect = 8e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 16 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 72
|||||||||||||| |||||||| |||| | ||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctat 68
>RF00129;mir-103;CT573279.9/199469-199546 7955:Danio rerio
(zebrafish)
Length = 78
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 49 tcaagcagcattgtacagggctatcaaagcacag 82
|||||||||||||||||||||||| |||||||||
Sbjct: 45 tcaagcagcattgtacagggctatgaaagcacag 78
>RF00129;mir-103;AANH01004124.1/31115-31038 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 12 ttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggcta 71
|||||| ||||||| ||| ||||||||||| | | |||||||||||||||||||||||
Sbjct: 8 ttcagcctctttacggtgctgccttgtggcgtctcgatcaagcagcattgtacagggcta 67
Query: 72 t 72
|
Sbjct: 68 t 68
>RF00129;mir-103;BX323842.8/48404-48481 7955:Danio rerio
(zebrafish)
Length = 78
Score = 56.0 bits (28), Expect = 8e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 13 tcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 72
||||| ||||||| ||| |||||||||| || | ||||||||||||||||||||||||
Sbjct: 9 tcagcctctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AANH01006686.1/13404-13327 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 56.0 bits (28), Expect = 8e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 9 gctttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacaggg 68
||||| ||| ||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 5 gcttttagcctctttacagtgctgccttgtctgatcaggttcaagcagcattgtacaggg 64
Query: 69 ctat 72
||||
Sbjct: 65 ctat 68
>RF00129;mir-103;BAAE01256445.1/2223-2146 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 56.0 bits (28), Expect = 8e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 9 gctttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacaggg 68
||||| ||| ||||||||||| |||||||| | | ||||||||||||||||||||||
Sbjct: 5 gcttttagcctctttacagtgctgccttgtcttctcgcgttcaagcagcattgtacaggg 64
Query: 69 ctat 72
||||
Sbjct: 65 ctat 68
>RF00129;mir-103;BAAF04068432.1/1846-1923 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 tcaagcagcattgtacagggctat 72
||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctat 68
