miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00684;mir-122;AAWZ01008604.1/2344-2417 28377:Anolis
carolinensis (green anole)
Length = 74
Score = 107 bits (54), Expect = 2e-23
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 1 agctgtggagtgtgacaatggtgtttgtgtccaaaccatcaaacgccattatcacactaa 60
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 4 agctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacactaa 63
Query: 61 atagct 66
||||||
Sbjct: 64 atagct 69
>RF00684;mir-122;AABR04103114.1/951-878 10116:Rattus norvegicus
(Norway rat)
Length = 74
Score = 99.6 bits (50), Expect = 4e-21
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 1 agctgtggagtgtgacaatggtgtttgtgtccaaaccatcaaacgccattatcacactaa 60
|||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 4 agctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacactaa 63
Query: 61 atagct 66
| ||||
Sbjct: 64 acagct 69
>RF00684;mir-122;BAAE01201314.1/775-848 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 91.7 bits (46), Expect = 1e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 1 agctgtggagtgtgacaatggtgtttgtgtccaaaccatcaaacgccattatcacactaa 60
|||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct: 4 agctgtggagtgtgacaatggtgtttgtttcctgcctatcaaacgccattatcacactaa 63
Query: 61 atagct 66
||||||
Sbjct: 64 atagct 69
>RF00684;mir-122;CR925730.6/26724-26798 7955:Danio rerio
(zebrafish)
Length = 75
Score = 61.9 bits (31), Expect = 9e-10
Identities = 60/68 (88%), Gaps = 5/68 (7%)
Strand = Plus / Plus
Query: 1 agctgtggagtgtgacaatggtgtttgtgtccaaac---catcaaacgccattatcacac 57
|||||||||||||||||||||||||||| || | | | |||||||||||||||||||
Sbjct: 4 agctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatcacac 61
Query: 58 taaatagc 65
||||||||
Sbjct: 62 taaatagc 69
>RF00684;mir-122;AAVX01098255.1/690-764 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 37 catcaaacgccattatcacactaaata 63
|||||||||||||||||||||||||||
Sbjct: 41 catcaaacgccattatcacactaaata 67
