miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00052;lin-4;AAQQ01300049.1/868-937 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 70
Score = 119 bits (60), Expect = 5e-27
Identities = 67/68 (98%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 10 ctcagtccctgagaccctaacttgtgatgtttaccgtttaaatccacgggttaggctctt 69
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2 ctcagtccctgagaccctaacttgtgatgtttaccgtttaaat-cacgggttaggctctt 60
Query: 70 gggagctg 77
||||||||
Sbjct: 61 gggagctg 68
>RF00052;lin-4;ABRQ01266683.1/74-144 9813:Procavia capensis (cape
rock hyrax)
Length = 71
Score = 119 bits (60), Expect = 5e-27
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 10 ctcagtccctgagaccctaacttgtgatgtttaccgtttaaatccacgggttaggctctt 69
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctcaatccctgagaccctaatttgtgatgtttaccgtttaaatccacgggttaggctctt 61
Query: 70 gggagctg 77
||||||||
Sbjct: 62 gggagctg 69
>RF00052;lin-4;AAVX01166684.1/76-6 7868:Callorhinchus milii (ghost
shark)
Length = 71
Score = 95.6 bits (48), Expect = 8e-20
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 10 ctcagtccctgagaccctaacttgtgatgtttaccgtttaaatccacgggttaggctctt 69
||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 2 ctcagtccctgagaccctaacttgtgatgtttaacttcttaatccacgggttaggctctt 61
Query: 70 ggga 73
||||
Sbjct: 62 ggga 65
>RF00052;lin-4;AAWZ01018120.1/1937-2007 28377:Anolis carolinensis
(green anole)
Length = 71
Score = 87.7 bits (44), Expect = 2e-17
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctaacttgtgatgtttaccgtttaaatccacgggttaggctcttggga 73
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 6 gtccctgagaccctaacttgtgacgtttagtttttaagtccacgggttaggctcttggga 65
Query: 74 gctg 77
||||
Sbjct: 66 gctg 69
>RF00052;lin-4;BX663520.9/242554-242624 7955:Danio rerio
(zebrafish)
Length = 71
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtgatgtttaccgtttaaatccacgggttaggctcttgggag 74
|||||||||||||||||||||| |||| || ||| | ||||||||||| |||||||||
Sbjct: 7 tccctgagaccctaacttgtgacgttttcctgttatgtgcacgggttaggttcttgggag 66
Query: 75 ctg 77
|||
Sbjct: 67 ctg 69
>RF00052;lin-4;AAJJ01000960.1/11976-11909 7070:Tribolium castaneum
(red flour beetle)
Length = 68
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtgatgtt 40
||||||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtgatgtt 32
>RF00052;lin-4;AAGJ02034255.1/5710-5639 7668:Strongylocentrotus
purpuratus
Length = 72
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtgatgt 39
|||||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtgatgt 31
>RF00052;lin-4;AADN02042928.1/16455-16525 9031:Gallus gallus
(chicken)
Length = 71
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 agtccctgagaccctaacttgtgatgttt 41
|||||||||||||||||||||||| ||||
Sbjct: 5 agtccctgagaccctaacttgtgaggttt 33
>RF00052;lin-4;ABEP02005607.1/36374-36438 7739:Branchiostoma
floridae (Florida lancelet)
Length = 65
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtgatgt 39
|||||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtgatgt 31
>RF00052;lin-4;ABRQ01036339.1/2289-2358 9813:Procavia capensis
(cape rock hyrax)
Length = 70
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 agtccctgagaccctaacttgtga 36
||||||||||||||||||||||||
Sbjct: 5 agtccctgagaccctaacttgtga 28
>RF00052;lin-4;BAAF04027540.1/8397-8327 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctaacttgtgatgtttaccgtttaaatccacgggttaggctcttggga 73
||||||||||||||||||||||| ||| | || | |||||||||| |||||| ||||
Sbjct: 6 gtccctgagaccctaacttgtgacgttgttctttcatgtccacgggtttggctctcggga 65
Query: 74 gctg 77
||||
Sbjct: 66 gctg 69
>RF00052;lin-4;BAAF04030494.1/1393-1463 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 10 ctcagtccctgagaccctaacttgtgatgttt 41
|||| |||||||||||||||||||||| ||||
Sbjct: 2 ctcattccctgagaccctaacttgtgacgttt 33
>RF00052;lin-4;AAZO01005184.1/24431-24501 121224:Pediculus humanus
corporis (human body louse)
Length = 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtgatg 38
||||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtgatg 30
>RF00052;lin-4;ABJB010589032.1/2364-2293 6945:Ixodes scapularis
(black-legged tick)
Length = 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtgatg 38
||||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtgatg 30
>RF00052;lin-4;CAAK05045496.1/11692-11621 7955:Danio rerio
(zebrafish)
Length = 72
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctaacttgtga 36
|||||||||||||||||||||||
Sbjct: 6 gtccctgagaccctaacttgtga 28
>RF00052;lin-4;CAAB01001308.1/53300-53230 31033:Takifugu rubripes
Length = 71
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 ctcagtccctgagaccctaacttgtga 36
|||| ||||||||||||||||||||||
Sbjct: 2 ctcattccctgagaccctaacttgtga 28
>RF00052;lin-4;BX284646.4/38142-38072 7955:Danio rerio (zebrafish)
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtga 36
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;BAAE01206590.1/1293-1364 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtga 36
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;ABKQ02024066.1/14943-15012 377270:Anopheles gambiae
S
Length = 70
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtga 36
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;AAPU01010514.1/89504-89436 7230:Drosophila
mojavensis
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtga 36
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;AADG05003176.1/75746-75815 7460:Apis mellifera
(honey bee)
Length = 70
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 16 ccctgagaccctaacttgtga 36
|||||||||||||||||||||
Sbjct: 8 ccctgagaccctaacttgtga 28
