miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00649;mir-128;AADN02016954.1/107412-107493 9031:Gallus gallus
(chicken)
Length = 82
Score = 115 bits (58), Expect = 7e-26
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 1 gttggattcggggccgtagcactgtctgagaggtttacatttctcacagtgaaccggtct 60
|||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 gttgaattcggggccgtaacactgtctgagaggtttatatttctcacagtgaaccggtct 66
Query: 61 ctttttcagc 70
||||||||||
Sbjct: 67 ctttttcagc 76
>RF00649;mir-128;AAPN01333292.1/110-29 9258:Ornithorhynchus
anatinus (platypus)
Length = 82
Score = 69.9 bits (35), Expect = 4e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 3 tggattcggggccgtagcactgtctgagaggtttacatttctcacagtgaaccggtctct 62
|||||||||||||| ||| ||||||| ||||||| |||||||||||||||||||||
Sbjct: 9 tggattcggggccgatacacggtctgaggggtttacgagtctcacagtgaaccggtctct 68
Query: 63 ttttcag 69
|||||||
Sbjct: 69 ttttcag 75
>RF00649;mir-128;CAAK05046368.1/14745-14829 7955:Danio rerio
(zebrafish)
Length = 85
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 tttctcacagtgaaccggtctctttttc 67
||||||||||||||||||||||||||||
Sbjct: 49 tttctcacagtgaaccggtctctttttc 76
>RF00649;mir-128;CAAB01001230.1/17567-17484 31033:Takifugu
rubripes
Length = 84
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 42 tctcacagtgaaccggtctctttttcagc 70
|||||||||||||||||||||||| ||||
Sbjct: 50 tctcacagtgaaccggtctcttttccagc 78
>RF00649;mir-128;ABPJ01009935.1/1344-1261 35575:Mchenga conophoros
Length = 84
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 42 tctcacagtgaaccggtctctttttcagc 70
|||||||||||||||||||||||| ||||
Sbjct: 50 tctcacagtgaaccggtctcttttccagc 78
>RF00649;mir-128;AADN02001307.1/37422-37505 9031:Gallus gallus
(chicken)
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 tctcacagtgaaccggtctctttt 65
||||||||||||||||||||||||
Sbjct: 50 tctcacagtgaaccggtctctttt 73
>RF00649;mir-128;CAAK05043402.1/2817-2901 7955:Danio rerio
(zebrafish)
Length = 85
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 tctcacagtgaaccggtctctttt 65
||||||||||||||||||||||||
Sbjct: 51 tctcacagtgaaccggtctctttt 74
>RF00649;mir-128;BAAF04005951.1/319-236 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 tctcacagtgaaccggtctctttt 65
||||||||||||||||||||||||
Sbjct: 50 tctcacagtgaaccggtctctttt 73
>RF00649;mir-128;BAAE01144804.1/712-628 8090:Oryzias latipes
(Japanese medaka)
Length = 85
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 tctcacagtgaaccggtctctttt 65
||||||||||||||||||||||||
Sbjct: 51 tctcacagtgaaccggtctctttt 74
>RF00649;mir-128;AAPN01083252.1/12750-12833 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 tctcacagtgaaccggtctcttt 64
|||||||||||||||||||||||
Sbjct: 50 tctcacagtgaaccggtctcttt 72
>RF00649;mir-128;AAYZ01088765.1/13723-13805 9978:Ochotona princeps
(American pika)
Length = 83
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 tctcacagtgaaccggtctcttt 64
|||||||||||||||||||||||
Sbjct: 49 tctcacagtgaaccggtctcttt 71
>RF00649;mir-128;AAVX01050759.1/9619-9536 7868:Callorhinchus milii
(ghost shark)
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 tctcacagtgaaccggtctcttt 64
|||||||||||||||||||||||
Sbjct: 50 tctcacagtgaaccggtctcttt 72
