miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00486;mir-129;AAPY01581361.1/1091-1178 37347:Tupaia belangeri
(northern tree shrew)
Length = 88
Score = 121 bits (61), Expect = 1e-27
Identities = 71/73 (97%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 1 tggatctttttgcggtctgggcttgctgttc-tctcgacagtagtcaggaagcccttacc 59
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 81 tggatctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttacc 22
Query: 60 ccaaaaagtatct 72
|||||||||||||
Sbjct: 21 ccaaaaagtatct 9
>RF00486;mir-129;AAGW01169874.1/1220-1131 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 111 bits (56), Expect = 1e-24
Identities = 69/72 (95%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 2 ggatctttttgcggtctgggcttgctgttc-tctcgacagtagtcaggaagcccttaccc 60
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 9 ggatctttttgcggtctgggcttgctgttcctctcagcagtagtcaggaagcccttaccc 68
Query: 61 caaaaagtatct 72
||||||||||||
Sbjct: 69 caaaaagtatct 80
>RF00486;mir-129;AAGU02960740.1/758-849 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 111 bits (56), Expect = 1e-24
Identities = 66/68 (97%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttc-tctcgacagtagtcaggaagcccttaccccaa 63
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaa 73
Query: 64 aaagtatc 71
||||||||
Sbjct: 74 aaagtatc 81
>RF00486;mir-129;AAFR03031917.1/14139-14048 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 92
Score = 99.6 bits (50), Expect = 5e-21
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 tggatctttttgcggtctgggcttgctgttctctcga-cagtagtcaggaagcccttacc 59
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 10 tggatctttttgcggtctgggcttgctgttccttaaatcagtagtcaggaagcccttacc 69
Query: 60 ccaaaaagtatcta 73
||||||||||||||
Sbjct: 70 ccaaaaagtatcta 83
>RF00486;mir-129;AAWZ01034774.1/20277-20368 28377:Anolis
carolinensis (green anole)
Length = 92
Score = 91.7 bits (46), Expect = 1e-18
Identities = 65/70 (92%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 2 ggatctttttgcggtctgggcttgctgtt-ctctcgacagtagtcaggaagcccttaccc 60
||||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||
Sbjct: 11 ggatctttttgcggtctgggcttgctgttcctccagtcagcagtcaggaagcccttaccc 70
Query: 61 caaaaagtat 70
||||||||||
Sbjct: 71 caaaaagtat 80
>RF00486;mir-129;BX649263.6/91330-91421 7955:Danio rerio
(zebrafish)
Length = 92
Score = 85.7 bits (43), Expect = 7e-17
Identities = 65/70 (92%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttctctcga--cagtagtcaggaagcccttacccca 62
||||||||||||||||||||||||||| || || |||||| ||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttc-cttgaaccagtagccaggaagcccttacccca 72
Query: 63 aaaagtatct 72
||||||||||
Sbjct: 73 aaaagtatct 82
>RF00486;mir-129;BAAE01197820.1/2737-2827 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 79.8 bits (40), Expect = 4e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttctctcgacagtagtcaggaagcccttaccccaaa 64
||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttcctaaggaagtagccaggaagcccttaccccaaa 73
Query: 65 aagtatct 72
||||||||
Sbjct: 74 aagtatct 81
>RF00486;mir-129;BX927136.11/83051-82960 7955:Danio rerio
(zebrafish)
Length = 92
Score = 73.8 bits (37), Expect = 3e-13
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttctctcga-cagtagtcaggaagcccttaccccaa 63
||||||||||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttccttaaatcaccagtcaggaagcccttaccccaa 73
Query: 64 aaagtatct 72
|||||||||
Sbjct: 74 aaagtatct 82
>RF00486;mir-129;AAVX01173776.1/393-484 7868:Callorhinchus milii
(ghost shark)
Length = 92
Score = 63.9 bits (32), Expect = 2e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgtt-ctctcgacagtagtcaggaagcccttacccca 62
||||||||||||||||||||||||||| || | || | |||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgttcctttgtccaacactcaggaagcccttacccca 72
Query: 63 aaaagtat 70
||||||||
Sbjct: 73 aaaagtat 80
>RF00486;mir-129;CAAE01017155.1/507-418 99883:Tetraodon
nigroviridis
Length = 90
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgttctct 34
|||||||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgttctct 43
>RF00486;mir-129;CR376774.9/14862-14774 7955:Danio rerio
(zebrafish)
Length = 89
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgttctc 33
||||||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgttctc 42
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 54 ggaagcccttaccccaaaaag 74
>RF00486;mir-129;CR376745.11/92203-92293 7955:Danio rerio
(zebrafish)
Length = 91
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgttc 31
||||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgttc 40
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 56 ggaagcccttaccccaaaaag 76
>RF00486;mir-129;BAAF04038928.1/6397-6487 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgtt 30
|||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgtt 39
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 56 ggaagcccttaccccaaaaag 76
>RF00486;mir-129;ABQF01002214.1/108-198 59729:Taeniopygia guttata
Length = 91
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgt 38
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 56 ggaagcccttaccccaaaaag 76
>RF00486;mir-129;AANH01000122.1/1544-1631 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;BAAF04049597.1/1635-1547 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgt 38
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 54 ggaagcccttaccccaaaaag 74
>RF00486;mir-129;CAAB01002535.1/31821-31735 31033:Takifugu
rubripes
Length = 87
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgt 29
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 45 caggaagcccttaccccaaaaagtatct 72
||||||||||||||||||||||| ||||
Sbjct: 50 caggaagcccttaccccaaaaagcatct 77
>RF00486;mir-129;BAAF04098976.1/11798-11711 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgt 29
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 45 caggaagcccttaccccaaaaagtatct 72
||||||||||||||||||||||| ||||
Sbjct: 51 caggaagcccttaccccaaaaagcatct 78
>RF00486;mir-129;CAAB01002050.1/381-289 31033:Takifugu rubripes
Length = 93
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgct 27
||||||||||||||||||||||||
Sbjct: 14 atctttttgcggtctgggcttgct 37
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 58 ggaagcccttaccccaaaaag 78
>RF00486;mir-129;AANH01001665.1/69968-69881 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 45 caggaagcccttaccccaaaaagtatct 72
||||||||||||||||||||||| ||||
Sbjct: 51 caggaagcccttaccccaaaaagcatct 78
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgt 29
|||||||||||||||| ||||||||
Sbjct: 14 tctttttgcggtctggacttgctgt 38
>RF00486;mir-129;ABRQ01241339.1/77-1 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 ttttgcggtctgggcttgctgt 29
||||||||||||||||||||||
Sbjct: 16 ttttgcggtctgggcttgctgt 37
