miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31852_mmu-mir-129-1:mirbase
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 tggatctttttgcggtctgggcttgctgttctctcgacagtagtcaggaagcccttaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggatctttttgcggtctgggcttgctgttctctcgacagtagtcaggaagcccttaccc 60
Query: 61 caaaaagtatcta 73
|||||||||||||
Sbjct: 61 caaaaagtatcta 73
>32729_rno-mir-129-1:mirbase
Length = 72
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttctctcgacagtagtcaggaagcccttaccccaaa 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttctctccacagtagtcaggaagcccttaccccaaa 64
Query: 65 aagtatct 72
||||||||
Sbjct: 65 aagtatct 72
>27018_eca-mir-129a:mirbase
Length = 73
Score = 121 bits (61), Expect = 7e-29
Identities = 71/73 (97%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 tggatctttttgcggtctgggcttgctgttc-tctcgacagtagtcaggaagcccttacc 59
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 1 tggatctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttacc 60
Query: 60 ccaaaaagtatct 72
|||||||||||||
Sbjct: 61 ccaaaaagtatct 73
>27019_eca-mir-129a:mirbase
Length = 73
Score = 121 bits (61), Expect = 7e-29
Identities = 71/73 (97%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 tggatctttttgcggtctgggcttgctgttc-tctcgacagtagtcaggaagcccttacc 59
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 1 tggatctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttacc 60
Query: 60 ccaaaaagtatct 72
|||||||||||||
Sbjct: 61 ccaaaaagtatct 73
>33978_ssc-mir-129b:mirbase
Length = 84
Score = 121 bits (61), Expect = 7e-29
Identities = 71/73 (97%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 tggatctttttgcggtctgggcttgctgttc-tctcgacagtagtcaggaagcccttacc 59
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 6 tggatctttttgcggtctgggcttgctgttcctctctacagtagtcaggaagcccttacc 65
Query: 60 ccaaaaagtatct 72
|||||||||||||
Sbjct: 66 ccaaaaagtatct 78
>27725_mml-mir-129:mirbase
Length = 72
Score = 119 bits (60), Expect = 3e-28
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 2 ggatctttttgcggtctgggcttgctgttc-tctcgacagtagtcaggaagcccttaccc 60
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1 ggatctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccc 60
Query: 61 caaaaagtatct 72
||||||||||||
Sbjct: 61 caaaaagtatct 72
>27726_mml-mir-129:mirbase
Length = 72
Score = 119 bits (60), Expect = 3e-28
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 2 ggatctttttgcggtctgggcttgctgttc-tctcgacagtagtcaggaagcccttaccc 60
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1 ggatctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccc 60
Query: 61 caaaaagtatct 72
||||||||||||
Sbjct: 61 caaaaagtatct 72
>28439_hsa-mir-129-1:mirbase
Length = 72
Score = 119 bits (60), Expect = 3e-28
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 2 ggatctttttgcggtctgggcttgctgttc-tctcgacagtagtcaggaagcccttaccc 60
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1 ggatctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccc 60
Query: 61 caaaaagtatct 72
||||||||||||
Sbjct: 61 caaaaagtatct 72
>30825_ppy-mir-129-1:mirbase
Length = 72
Score = 119 bits (60), Expect = 3e-28
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 2 ggatctttttgcggtctgggcttgctgttc-tctcgacagtagtcaggaagcccttaccc 60
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1 ggatctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccc 60
Query: 61 caaaaagtatct 72
||||||||||||
Sbjct: 61 caaaaagtatct 72
>33208_bta-mir-129-1:mirbase
Length = 72
Score = 119 bits (60), Expect = 3e-28
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 2 ggatctttttgcggtctgggcttgctgttc-tctcgacagtagtcaggaagcccttaccc 60
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1 ggatctttttgcggtctgggcttgctgttcctctctacagtagtcaggaagcccttaccc 60
Query: 61 caaaaagtatct 72
||||||||||||
Sbjct: 61 caaaaagtatct 72
>30216_ptr-mir-129-1:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 3 gatctttttgcggtctgggcttgctgttc-tctcgacagtagtcaggaagcccttacccc 61
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 1 gatctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttacccc 60
Query: 62 aaaaagtatct 72
|||||||||||
Sbjct: 61 aaaaagtatct 71
>26696_cfa-mir-129-1:mirbase
Length = 65
Score = 105 bits (53), Expect = 4e-24
Identities = 63/65 (96%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 6 ctttttgcggtctgggcttgctgttc-tctcgacagtagtcaggaagcccttaccccaaa 64
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaaa 60
Query: 65 aagta 69
|||||
Sbjct: 61 aagta 65
>31484_oan-mir-129:mirbase
Length = 128
Score = 105 bits (53), Expect = 4e-24
Identities = 69/73 (94%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 tggatctttttgcggtctgggcttgctgttc-tctcgacagtagtcaggaagcccttacc 59
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 25 tggatctttttgcggtctgggcttgctgttcctctaatcagtagtcaggaagcccttacc 84
Query: 60 ccaaaaagtatct 72
|||||||||||||
Sbjct: 85 ccaaaaagtatct 97
>27379_mdo-mir-129:mirbase
Length = 74
Score = 99.6 bits (50), Expect = 3e-22
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 tggatctttttgcggtctgggcttgctgttctctcga-cagtagtcaggaagcccttacc 59
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 1 tggatctttttgcggtctgggcttgctgttccttaaatcagtagtcaggaagcccttacc 60
Query: 60 ccaaaaagtatcta 73
||||||||||||||
Sbjct: 61 ccaaaaagtatcta 74
>34594_fru-mir-129-2:mirbase
Length = 73
Score = 87.7 bits (44), Expect = 1e-18
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttctctcgacagtagtcaggaagcccttaccccaaa 64
||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttcctaaggcagtagccaggaagcccttaccccaaa 64
Query: 65 aagtatct 72
||||||||
Sbjct: 65 aagtatct 72
>34741_tni-mir-129-2:mirbase
Length = 71
Score = 87.7 bits (44), Expect = 1e-18
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttctctcgacagtagtcaggaagcccttaccccaaa 64
||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct: 4 tctttttgcggtctgggcttgctgttcctaaggcagtagccaggaagcccttaccccaaa 63
Query: 65 aagtatct 72
||||||||
Sbjct: 64 aagtatct 71
>34287_dre-mir-129-1:mirbase
Length = 90
Score = 85.7 bits (43), Expect = 4e-18
Identities = 65/70 (92%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttctctcga--cagtagtcaggaagcccttacccca 62
||||||||||||||||||||||||||| || || |||||| ||||||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgttc-cttgaaccagtagccaggaagcccttacccca 71
Query: 63 aaaagtatct 72
||||||||||
Sbjct: 72 aaaagtatct 81
>34740_tni-mir-129-1:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgttctct 34
|||||||||||||||||||||||||||||||
Sbjct: 12 atctttttgcggtctgggcttgctgttctct 42
>34288_dre-mir-129-2:mirbase
Length = 87
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgttctc 33
||||||||||||||||||||||||||||||
Sbjct: 12 atctttttgcggtctgggcttgctgttctc 41
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 53 ggaagcccttaccccaaaaag 73
>25771_xtr-mir-129-2:mirbase
Length = 82
Score = 58.0 bits (29), Expect = 9e-10
Identities = 57/64 (89%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 6 ctttttgcggtctgggcttgctgttctc--tcgacagtagtcaggaagcccttaccccaa 63
|||||||||||||||||||||||||||| || | |||| ||||||||||||| |||||
Sbjct: 9 ctttttgcggtctgggcttgctgttctcaatc-aaagtatccaggaagcccttatcccaa 67
Query: 64 aaag 67
||||
Sbjct: 68 aaag 71
>34593_fru-mir-129-1:mirbase
Length = 89
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgttct 32
|||||||||||||||||||||||||||||
Sbjct: 12 atctttttgcggtctgggcttgctgttct 40
>25770_xtr-mir-129-1:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||||
Sbjct: 12 atctttttgcggtctgggcttgctgt 37
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 55 ggaagcccttaccccaaaaag 75
>26458_tgu-mir-129:mirbase
Length = 83
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||||
Sbjct: 9 atctttttgcggtctgggcttgctgt 34
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 52 ggaagcccttaccccaaaaag 72
>27020_eca-mir-129b:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||||
Sbjct: 5 atctttttgcggtctgggcttgctgt 30
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>27021_eca-mir-129b:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||||
Sbjct: 5 atctttttgcggtctgggcttgctgt 30
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>27727_mml-mir-129-2:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||||
Sbjct: 14 atctttttgcggtctgggcttgctgt 39
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 56 ggaagcccttaccccaaaaag 76
>28440_hsa-mir-129-2:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgt 38
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 55 ggaagcccttaccccaaaaag 75
>28441_hsa-mir-129-2:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgt 38
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 55 ggaagcccttaccccaaaaag 75
>30217_ptr-mir-129-2:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||||
Sbjct: 12 atctttttgcggtctgggcttgctgt 37
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 54 ggaagcccttaccccaaaaag 74
>30826_ppy-mir-129-2:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgt 38
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 55 ggaagcccttaccccaaaaag 75
>31854_mmu-mir-129-2:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgt 38
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 55 ggaagcccttaccccaaaaag 75
>31855_mmu-mir-129-2:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgt 38
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 55 ggaagcccttaccccaaaaag 75
>32730_rno-mir-129-2:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||||
Sbjct: 17 atctttttgcggtctgggcttgctgt 42
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 59 ggaagcccttaccccaaaaag 79
>33209_bta-mir-129-2:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||||
Sbjct: 14 atctttttgcggtctgggcttgctgt 39
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 56 ggaagcccttaccccaaaaag 76
>33210_bta-mir-129-2:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||||
Sbjct: 14 atctttttgcggtctgggcttgctgt 39
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 56 ggaagcccttaccccaaaaag 76
>33977_ssc-mir-129a:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||||
Sbjct: 9 atctttttgcggtctgggcttgctgt 34
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 51 ggaagcccttaccccaaaaag 71
>25478_pma-mir-129a:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 atctttttgcggtctgggcttgctgttc 31
||||||||||||| ||||||||||||||
Sbjct: 13 atctttttgcggtttgggcttgctgttc 40
>26697_cfa-mir-129-2:mirbase
Length = 63
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 ctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgt 24
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 41 ggaagcccttaccccaaaaag 61
