miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31855_mmu-mir-129-2:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
Query: 61 ccttaccccaaaaagcattcgcggagggcg 90
||||||||||||||||||||||||||||||
Sbjct: 61 ccttaccccaaaaagcattcgcggagggcg 90
>32730_rno-mir-129-2:mirbase
Length = 97
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 64
Query: 61 ccttaccccaaaaagcattcgcggagggcg 90
||||||||||||||||||||||||||||||
Sbjct: 65 ccttaccccaaaaagcattcgcggagggcg 94
>33209_bta-mir-129-2:mirbase
Length = 94
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 61
Query: 61 ccttaccccaaaaagcattcgcggagggcg 90
||||||||||||||||||||||||||||||
Sbjct: 62 ccttaccccaaaaagcattcgcggagggcg 91
>33210_bta-mir-129-2:mirbase
Length = 94
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 61
Query: 61 ccttaccccaaaaagcattcgcggagggcg 90
||||||||||||||||||||||||||||||
Sbjct: 62 ccttaccccaaaaagcattcgcggagggcg 91
>27727_mml-mir-129-2:mirbase
Length = 92
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgcccttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 61
Query: 61 ccttaccccaaaaagcattcgcggagggcg 90
||||||||||||||||||||||||||||||
Sbjct: 62 ccttaccccaaaaagcattcgcggagggcg 91
>28440_hsa-mir-129-2:mirbase
Length = 90
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
Query: 61 ccttaccccaaaaagcattcgcggagggcg 90
||||||||||||||||||| ||||||||||
Sbjct: 61 ccttaccccaaaaagcatttgcggagggcg 90
>28441_hsa-mir-129-2:mirbase
Length = 90
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
Query: 61 ccttaccccaaaaagcattcgcggagggcg 90
||||||||||||||||||| ||||||||||
Sbjct: 61 ccttaccccaaaaagcatttgcggagggcg 90
>30826_ppy-mir-129-2:mirbase
Length = 90
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
Query: 61 ccttaccccaaaaagcattcgcggagggcg 90
||||||||||||||||||| ||||||||||
Sbjct: 61 ccttaccccaaaaagcatttgcggagggcg 90
>30217_ptr-mir-129-2:mirbase
Length = 89
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 6 ttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctta 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctta 64
Query: 66 ccccaaaaagcattcgcggagggcg 90
|||||||||||||| ||||||||||
Sbjct: 65 ccccaaaaagcatttgcggagggcg 89
>33977_ssc-mir-129a:mirbase
Length = 80
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 6 ttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctta 65
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctta 61
Query: 66 ccccaaaaagcattcgcgg 84
|||||||||||||||||||
Sbjct: 62 ccccaaaaagcattcgcgg 80
>27020_eca-mir-129b:mirbase
Length = 74
Score = 147 bits (74), Expect = 2e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 9 gcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttaccc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttaccc 60
Query: 69 caaaaagcattcgc 82
||||||||||||||
Sbjct: 61 caaaaagcattcgc 74
>27021_eca-mir-129b:mirbase
Length = 74
Score = 147 bits (74), Expect = 2e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 9 gcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttaccc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttaccc 60
Query: 69 caaaaagcattcgc 82
||||||||||||||
Sbjct: 61 caaaaagcattcgc 74
>26697_cfa-mir-129-2:mirbase
Length = 63
Score = 117 bits (59), Expect = 1e-27
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 15 ctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttaccccaaaaa 74
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgtacataactcgatagccggaagcccttaccccaaaaa 60
Query: 75 gca 77
|||
Sbjct: 61 gca 63
>26458_tgu-mir-129:mirbase
Length = 83
Score = 115 bits (58), Expect = 5e-27
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 6 ttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagccctt 64
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 2 ttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccctt 61
Query: 65 accccaaaaagcattcgcggag 86
||||||||||||||||||||||
Sbjct: 62 accccaaaaagcattcgcggag 83
>25770_xtr-mir-129-1:mirbase
Length = 90
Score = 87.7 bits (44), Expect = 1e-18
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 12 aatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacccca 70
|||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||
Sbjct: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70
Query: 71 aaaagcattcgcggagggcg 90
||||||||| ||||||||||
Sbjct: 71 aaaagcatttgcggagggcg 90
>25478_pma-mir-129a:mirbase
Length = 88
Score = 81.8 bits (41), Expect = 8e-17
Identities = 70/76 (92%), Gaps = 4/76 (5%)
Strand = Plus / Plus
Query: 7 tcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagccctta 65
||||||||||||||||||| |||||||||||| ||| || ||||||||| |||||||||
Sbjct: 7 tcgcgaatctttttgcggtttgggcttgctgttcat--ct-aatagccggcaagccctta 63
Query: 66 ccccaaaaagcattcg 81
||||||||||||||||
Sbjct: 64 ccccaaaaagcattcg 79
>34288_dre-mir-129-2:mirbase
Length = 87
Score = 77.8 bits (39), Expect = 1e-15
Identities = 77/88 (87%), Gaps = 5/88 (5%)
Strand = Plus / Plus
Query: 4 ctttcgcgaatctttttgcggtctgggcttgctgtacataac--tcaatagccggaagcc 61
||||| ||||||||||||||||||||||||||||| | ||| ||||| |||||||
Sbjct: 3 ctttcacgaatctttttgcggtctgggcttgctgttctcaactatcaat---gggaagcc 59
Query: 62 cttaccccaaaaagcattcgcggagggc 89
|||||||||||||||||| |||||||||
Sbjct: 60 cttaccccaaaaagcatttgcggagggc 87
>34594_fru-mir-129-2:mirbase
Length = 73
Score = 69.9 bits (35), Expect = 3e-13
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 14 tctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttaccccaaa 72
||||||||||||||||||||||||| | ||| || ||||| ||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttcctaaggcagtagccaggaagcccttaccccaaa 64
Query: 73 aag 75
|||
Sbjct: 65 aag 67
>34741_tni-mir-129-2:mirbase
Length = 71
Score = 69.9 bits (35), Expect = 3e-13
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 14 tctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttaccccaaa 72
||||||||||||||||||||||||| | ||| || ||||| ||||||||||||||||||
Sbjct: 4 tctttttgcggtctgggcttgctgttcctaaggcagtagccaggaagcccttaccccaaa 63
Query: 73 aag 75
|||
Sbjct: 64 aag 66
>34740_tni-mir-129-1:mirbase
Length = 85
Score = 67.9 bits (34), Expect = 1e-12
Identities = 69/80 (86%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 10 cgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttacccc 69
||||||||||||||||||||||||||||| | ||| | |||||||||||||||||
Sbjct: 9 cgaatctttttgcggtctgggcttgctgttctctgctc---acccggaagcccttacccc 65
Query: 70 aaaaagcattcgcggagggc 89
|||||||||| |||| ||||
Sbjct: 66 aaaaagcatttgcggggggc 85
>34593_fru-mir-129-1:mirbase
Length = 89
Score = 61.9 bits (31), Expect = 7e-11
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 10 cgaatctttttgcggtctgggcttgctgtacataactcaatagc-cggaagcccttaccc 68
||||||||||||||||||||||||||||| | | ||| | | ||||||||||||||
Sbjct: 9 cgaatctttttgcggtctgggcttgctgttctttactggtaatctgggaagcccttaccc 68
Query: 69 caaaaagcattcgcggagg 87
||||||||||| |||||||
Sbjct: 69 caaaaagcatttgcggagg 87
>27379_mdo-mir-129:mirbase
Length = 74
Score = 58.0 bits (29), Expect = 1e-09
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctg-tacataactcaatag-ccggaagcccttacccca 70
||||||||||||||||||||||||| | | ||| ||| ||| | ||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgttccttaaatcagtagtcaggaagcccttacccca 63
Query: 71 aaaag 75
|||||
Sbjct: 64 aaaag 68
>27018_eca-mir-129a:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
>27019_eca-mir-129a:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
>27725_mml-mir-129:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>27726_mml-mir-129:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>28439_hsa-mir-129-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>30216_ptr-mir-129-1:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 2 atctttttgcggtctgggcttgctgt 27
>30825_ppy-mir-129-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>31484_oan-mir-129:mirbase
Length = 128
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 28 atctttttgcggtctgggcttgctgt 53
>31852_mmu-mir-129-1:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaag 75
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>31853_mmu-mir-129-1:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaag 75
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>33208_bta-mir-129-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>33978_ssc-mir-129b:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 9 atctttttgcggtctgggcttgctgt 34
>34287_dre-mir-129-1:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 14 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 70
||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 71
Query: 71 aaaag 75
|||||
Sbjct: 72 aaaag 76
>32729_rno-mir-129-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 tctttttgcggtctgggcttgctgt 38
|||||||||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgt 29
>25771_xtr-mir-129-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||
Sbjct: 9 ctttttgcggtctgggcttgctgt 32
>26696_cfa-mir-129-1:mirbase
Length = 65
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgt 24
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaag 75
|||||||||||||||||||||
Sbjct: 43 ggaagcccttaccccaaaaag 63
