miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>31855_mmu-mir-129-2:mirbase
          Length = 90

 Score =  178 bits (90), Expect = 4e-46
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60

                                        
Query: 61 ccttaccccaaaaagcattcgcggagggcg 90
          ||||||||||||||||||||||||||||||
Sbjct: 61 ccttaccccaaaaagcattcgcggagggcg 90




>32730_rno-mir-129-2:mirbase
          Length = 97

 Score =  170 bits (86), Expect = 1e-43
 Identities = 89/90 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5  tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 64

                                        
Query: 61 ccttaccccaaaaagcattcgcggagggcg 90
          ||||||||||||||||||||||||||||||
Sbjct: 65 ccttaccccaaaaagcattcgcggagggcg 94




>33209_bta-mir-129-2:mirbase
          Length = 94

 Score =  170 bits (86), Expect = 1e-43
 Identities = 89/90 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 61

                                        
Query: 61 ccttaccccaaaaagcattcgcggagggcg 90
          ||||||||||||||||||||||||||||||
Sbjct: 62 ccttaccccaaaaagcattcgcggagggcg 91




>33210_bta-mir-129-2:mirbase
          Length = 94

 Score =  170 bits (86), Expect = 1e-43
 Identities = 89/90 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 61

                                        
Query: 61 ccttaccccaaaaagcattcgcggagggcg 90
          ||||||||||||||||||||||||||||||
Sbjct: 62 ccttaccccaaaaagcattcgcggagggcg 91




>27727_mml-mir-129-2:mirbase
          Length = 92

 Score =  163 bits (82), Expect = 3e-41
 Identities = 88/90 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
          |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tgcccttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 61

                                        
Query: 61 ccttaccccaaaaagcattcgcggagggcg 90
          ||||||||||||||||||||||||||||||
Sbjct: 62 ccttaccccaaaaagcattcgcggagggcg 91




>28440_hsa-mir-129-2:mirbase
          Length = 90

 Score =  163 bits (82), Expect = 3e-41
 Identities = 88/90 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60

                                        
Query: 61 ccttaccccaaaaagcattcgcggagggcg 90
          ||||||||||||||||||| ||||||||||
Sbjct: 61 ccttaccccaaaaagcatttgcggagggcg 90




>28441_hsa-mir-129-2:mirbase
          Length = 90

 Score =  163 bits (82), Expect = 3e-41
 Identities = 88/90 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60

                                        
Query: 61 ccttaccccaaaaagcattcgcggagggcg 90
          ||||||||||||||||||| ||||||||||
Sbjct: 61 ccttaccccaaaaagcatttgcggagggcg 90




>30826_ppy-mir-129-2:mirbase
          Length = 90

 Score =  163 bits (82), Expect = 3e-41
 Identities = 88/90 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60

                                        
Query: 61 ccttaccccaaaaagcattcgcggagggcg 90
          ||||||||||||||||||| ||||||||||
Sbjct: 61 ccttaccccaaaaagcatttgcggagggcg 90




>30217_ptr-mir-129-2:mirbase
          Length = 89

 Score =  161 bits (81), Expect = 1e-40
 Identities = 84/85 (98%)
 Strand = Plus / Plus

                                                                      
Query: 6  ttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctta 65
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5  ttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctta 64

                                   
Query: 66 ccccaaaaagcattcgcggagggcg 90
          |||||||||||||| ||||||||||
Sbjct: 65 ccccaaaaagcatttgcggagggcg 89




>33977_ssc-mir-129a:mirbase
          Length = 80

 Score =  149 bits (75), Expect = 4e-37
 Identities = 78/79 (98%)
 Strand = Plus / Plus

                                                                      
Query: 6  ttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctta 65
          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  ttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctta 61

                             
Query: 66 ccccaaaaagcattcgcgg 84
          |||||||||||||||||||
Sbjct: 62 ccccaaaaagcattcgcgg 80




>27020_eca-mir-129b:mirbase
          Length = 74

 Score =  147 bits (74), Expect = 2e-36
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                      
Query: 9  gcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttaccc 68
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttaccc 60

                        
Query: 69 caaaaagcattcgc 82
          ||||||||||||||
Sbjct: 61 caaaaagcattcgc 74




>27021_eca-mir-129b:mirbase
          Length = 74

 Score =  147 bits (74), Expect = 2e-36
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                      
Query: 9  gcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttaccc 68
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttaccc 60

                        
Query: 69 caaaaagcattcgc 82
          ||||||||||||||
Sbjct: 61 caaaaagcattcgc 74




>26697_cfa-mir-129-2:mirbase
          Length = 63

 Score =  117 bits (59), Expect = 1e-27
 Identities = 62/63 (98%)
 Strand = Plus / Plus

                                                                      
Query: 15 ctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttaccccaaaaa 74
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1  ctttttgcggtctgggcttgctgtacataactcgatagccggaagcccttaccccaaaaa 60

             
Query: 75 gca 77
          |||
Sbjct: 61 gca 63




>26458_tgu-mir-129:mirbase
          Length = 83

 Score =  115 bits (58), Expect = 5e-27
 Identities = 77/82 (93%), Gaps = 1/82 (1%)
 Strand = Plus / Plus

                                                                      
Query: 6  ttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagccctt 64
          |||||||||||||||||||||||||||||||||||||||||   || || ||||||||||
Sbjct: 2  ttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccctt 61

                                
Query: 65 accccaaaaagcattcgcggag 86
          ||||||||||||||||||||||
Sbjct: 62 accccaaaaagcattcgcggag 83




>25770_xtr-mir-129-1:mirbase
          Length = 90

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 72/80 (90%), Gaps = 1/80 (1%)
 Strand = Plus / Plus

                                                                      
Query: 12 aatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacccca 70
          ||||||||||||||||||||||||||||  ||| |   ||||| ||||||||||||||||
Sbjct: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70

                              
Query: 71 aaaagcattcgcggagggcg 90
          ||||||||| ||||||||||
Sbjct: 71 aaaagcatttgcggagggcg 90




>25478_pma-mir-129a:mirbase
          Length = 88

 Score = 81.8 bits (41), Expect = 8e-17
 Identities = 70/76 (92%), Gaps = 4/76 (5%)
 Strand = Plus / Plus

                                                                      
Query: 7  tcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagccctta 65
          ||||||||||||||||||| |||||||||||| |||  || ||||||||| |||||||||
Sbjct: 7  tcgcgaatctttttgcggtttgggcttgctgttcat--ct-aatagccggcaagccctta 63

                          
Query: 66 ccccaaaaagcattcg 81
          ||||||||||||||||
Sbjct: 64 ccccaaaaagcattcg 79




>34288_dre-mir-129-2:mirbase
          Length = 87

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 77/88 (87%), Gaps = 5/88 (5%)
 Strand = Plus / Plus

                                                                      
Query: 4  ctttcgcgaatctttttgcggtctgggcttgctgtacataac--tcaatagccggaagcc 61
          ||||| ||||||||||||||||||||||||||||| |  |||  |||||    |||||||
Sbjct: 3  ctttcacgaatctttttgcggtctgggcttgctgttctcaactatcaat---gggaagcc 59

                                      
Query: 62 cttaccccaaaaagcattcgcggagggc 89
          |||||||||||||||||| |||||||||
Sbjct: 60 cttaccccaaaaagcatttgcggagggc 87




>34594_fru-mir-129-2:mirbase
          Length = 73

 Score = 69.9 bits (35), Expect = 3e-13
 Identities = 57/63 (90%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                      
Query: 14 tctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttaccccaaa 72
          ||||||||||||||||||||||||| | |||  || ||||| ||||||||||||||||||
Sbjct: 5  tctttttgcggtctgggcttgctgttcctaaggcagtagccaggaagcccttaccccaaa 64

             
Query: 73 aag 75
          |||
Sbjct: 65 aag 67




>34741_tni-mir-129-2:mirbase
          Length = 71

 Score = 69.9 bits (35), Expect = 3e-13
 Identities = 57/63 (90%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                      
Query: 14 tctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttaccccaaa 72
          ||||||||||||||||||||||||| | |||  || ||||| ||||||||||||||||||
Sbjct: 4  tctttttgcggtctgggcttgctgttcctaaggcagtagccaggaagcccttaccccaaa 63

             
Query: 73 aag 75
          |||
Sbjct: 64 aag 66




>34740_tni-mir-129-1:mirbase
          Length = 85

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 69/80 (86%), Gaps = 3/80 (3%)
 Strand = Plus / Plus

                                                                      
Query: 10 cgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttacccc 69
          ||||||||||||||||||||||||||||| |    |||   | |||||||||||||||||
Sbjct: 9  cgaatctttttgcggtctgggcttgctgttctctgctc---acccggaagcccttacccc 65

                              
Query: 70 aaaaagcattcgcggagggc 89
          |||||||||| |||| ||||
Sbjct: 66 aaaaagcatttgcggggggc 85




>34593_fru-mir-129-1:mirbase
          Length = 89

 Score = 61.9 bits (31), Expect = 7e-11
 Identities = 68/79 (86%), Gaps = 1/79 (1%)
 Strand = Plus / Plus

                                                                      
Query: 10 cgaatctttttgcggtctgggcttgctgtacataactcaatagc-cggaagcccttaccc 68
          ||||||||||||||||||||||||||||| | | |||    | |  ||||||||||||||
Sbjct: 9  cgaatctttttgcggtctgggcttgctgttctttactggtaatctgggaagcccttaccc 68

                             
Query: 69 caaaaagcattcgcggagg 87
          ||||||||||| |||||||
Sbjct: 69 caaaaagcatttgcggagg 87




>27379_mdo-mir-129:mirbase
          Length = 74

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 58/65 (89%), Gaps = 2/65 (3%)
 Strand = Plus / Plus

                                                                      
Query: 13 atctttttgcggtctgggcttgctg-tacataactcaatag-ccggaagcccttacccca 70
          ||||||||||||||||||||||||| | | ||| ||| ||| | ||||||||||||||||
Sbjct: 4  atctttttgcggtctgggcttgctgttccttaaatcagtagtcaggaagcccttacccca 63

               
Query: 71 aaaag 75
          |||||
Sbjct: 64 aaaag 68




>27018_eca-mir-129a:mirbase
          Length = 73

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 atctttttgcggtctgggcttgctgt 38
          ||||||||||||||||||||||||||
Sbjct: 4  atctttttgcggtctgggcttgctgt 29




>27019_eca-mir-129a:mirbase
          Length = 73

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 atctttttgcggtctgggcttgctgt 38
          ||||||||||||||||||||||||||
Sbjct: 4  atctttttgcggtctgggcttgctgt 29




>27725_mml-mir-129:mirbase
          Length = 72

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 atctttttgcggtctgggcttgctgt 38
          ||||||||||||||||||||||||||
Sbjct: 3  atctttttgcggtctgggcttgctgt 28




>27726_mml-mir-129:mirbase
          Length = 72

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 atctttttgcggtctgggcttgctgt 38
          ||||||||||||||||||||||||||
Sbjct: 3  atctttttgcggtctgggcttgctgt 28




>28439_hsa-mir-129-1:mirbase
          Length = 72

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 atctttttgcggtctgggcttgctgt 38
          ||||||||||||||||||||||||||
Sbjct: 3  atctttttgcggtctgggcttgctgt 28




>30216_ptr-mir-129-1:mirbase
          Length = 71

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 atctttttgcggtctgggcttgctgt 38
          ||||||||||||||||||||||||||
Sbjct: 2  atctttttgcggtctgggcttgctgt 27




>30825_ppy-mir-129-1:mirbase
          Length = 72

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 atctttttgcggtctgggcttgctgt 38
          ||||||||||||||||||||||||||
Sbjct: 3  atctttttgcggtctgggcttgctgt 28




>31484_oan-mir-129:mirbase
          Length = 128

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 atctttttgcggtctgggcttgctgt 38
          ||||||||||||||||||||||||||
Sbjct: 28 atctttttgcggtctgggcttgctgt 53




>31852_mmu-mir-129-1:mirbase
          Length = 73

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 atctttttgcggtctgggcttgctgt 38
          ||||||||||||||||||||||||||
Sbjct: 4  atctttttgcggtctgggcttgctgt 29



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 ggaagcccttaccccaaaaag 75
          |||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67




>31853_mmu-mir-129-1:mirbase
          Length = 73

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 atctttttgcggtctgggcttgctgt 38
          ||||||||||||||||||||||||||
Sbjct: 4  atctttttgcggtctgggcttgctgt 29



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 ggaagcccttaccccaaaaag 75
          |||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67




>33208_bta-mir-129-1:mirbase
          Length = 72

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 atctttttgcggtctgggcttgctgt 38
          ||||||||||||||||||||||||||
Sbjct: 3  atctttttgcggtctgggcttgctgt 28




>33978_ssc-mir-129b:mirbase
          Length = 84

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 atctttttgcggtctgggcttgctgt 38
          ||||||||||||||||||||||||||
Sbjct: 9  atctttttgcggtctgggcttgctgt 34




>34287_dre-mir-129-1:mirbase
          Length = 90

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 58/65 (89%), Gaps = 4/65 (6%)
 Strand = Plus / Plus

                                                                      
Query: 14 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 70
          ||||||||||||||||||||||||| | |  ||| || ||||| ||||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 71

               
Query: 71 aaaag 75
          |||||
Sbjct: 72 aaaag 76




>32729_rno-mir-129-1:mirbase
          Length = 72

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 tctttttgcggtctgggcttgctgt 38
          |||||||||||||||||||||||||
Sbjct: 5  tctttttgcggtctgggcttgctgt 29




>25771_xtr-mir-129-2:mirbase
          Length = 82

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 15 ctttttgcggtctgggcttgctgt 38
          ||||||||||||||||||||||||
Sbjct: 9  ctttttgcggtctgggcttgctgt 32




>26696_cfa-mir-129-1:mirbase
          Length = 65

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 15 ctttttgcggtctgggcttgctgt 38
          ||||||||||||||||||||||||
Sbjct: 1  ctttttgcggtctgggcttgctgt 24



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 ggaagcccttaccccaaaaag 75
          |||||||||||||||||||||
Sbjct: 43 ggaagcccttaccccaaaaag 63