miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32731_rno-mir-130a:mirbase
Length = 88
Score = 113 bits (57), Expect = 1e-26
Identities = 64/65 (98%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 1 gagctcttttcacattgtgctactgtcta-acgtgtaccgagcagtgcaatgttaaaagg 59
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 13 gagctcttttcacattgtgctactgtctacacgtgtaccgagcagtgcaatgttaaaagg 72
Query: 60 gcatc 64
|||||
Sbjct: 73 gcatc 77
>33089_rno-mir-3590:mirbase
Length = 74
Score = 113 bits (57), Expect = 1e-26
Identities = 64/65 (98%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 1 gagctcttttcacattgtgctactgtcta-acgtgtaccgagcagtgcaatgttaaaagg 59
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 69 gagctcttttcacattgtgctactgtctacacgtgtaccgagcagtgcaatgttaaaagg 10
Query: 60 gcatc 64
|||||
Sbjct: 9 gcatc 5
>33090_rno-mir-3590:mirbase
Length = 74
Score = 113 bits (57), Expect = 1e-26
Identities = 64/65 (98%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 1 gagctcttttcacattgtgctactgtcta-acgtgtaccgagcagtgcaatgttaaaagg 59
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 69 gagctcttttcacattgtgctactgtctacacgtgtaccgagcagtgcaatgttaaaagg 10
Query: 60 gcatc 64
|||||
Sbjct: 9 gcatc 5
>27728_mml-mir-130a:mirbase
Length = 81
Score = 71.9 bits (36), Expect = 5e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 gagctcttttcacattgtgctactgtct-aacgtgtaccgagcagtgcaatgttaaaagg 59
|||||||||||||||||||||||||||| || ||| | ||||||||||||||||||||
Sbjct: 13 gagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgttaaaagg 72
Query: 60 gcat 63
||||
Sbjct: 73 gcat 76
>28211_mne-mir-130a:mirbase
Length = 89
Score = 71.9 bits (36), Expect = 5e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 gagctcttttcacattgtgctactgtct-aacgtgtaccgagcagtgcaatgttaaaagg 59
|||||||||||||||||||||||||||| || ||| | ||||||||||||||||||||
Sbjct: 13 gagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgttaaaagg 72
Query: 60 gcat 63
||||
Sbjct: 73 gcat 76
>28303_ggo-mir-130a:mirbase
Length = 89
Score = 71.9 bits (36), Expect = 5e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 gagctcttttcacattgtgctactgtct-aacgtgtaccgagcagtgcaatgttaaaagg 59
|||||||||||||||||||||||||||| || ||| | ||||||||||||||||||||
Sbjct: 13 gagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgttaaaagg 72
Query: 60 gcat 63
||||
Sbjct: 73 gcat 76
>28442_hsa-mir-130a:mirbase
Length = 89
Score = 71.9 bits (36), Expect = 5e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 gagctcttttcacattgtgctactgtct-aacgtgtaccgagcagtgcaatgttaaaagg 59
|||||||||||||||||||||||||||| || ||| | ||||||||||||||||||||
Sbjct: 13 gagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgttaaaagg 72
Query: 60 gcat 63
||||
Sbjct: 73 gcat 76
>30090_ppa-mir-130a:mirbase
Length = 89
Score = 71.9 bits (36), Expect = 5e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 gagctcttttcacattgtgctactgtct-aacgtgtaccgagcagtgcaatgttaaaagg 59
|||||||||||||||||||||||||||| || ||| | ||||||||||||||||||||
Sbjct: 13 gagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgttaaaagg 72
Query: 60 gcat 63
||||
Sbjct: 73 gcat 76
>30218_ptr-mir-130a:mirbase
Length = 88
Score = 71.9 bits (36), Expect = 5e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 gagctcttttcacattgtgctactgtct-aacgtgtaccgagcagtgcaatgttaaaagg 59
|||||||||||||||||||||||||||| || ||| | ||||||||||||||||||||
Sbjct: 12 gagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgttaaaagg 71
Query: 60 gcat 63
||||
Sbjct: 72 gcat 75
>30827_ppy-mir-130a:mirbase
Length = 89
Score = 71.9 bits (36), Expect = 5e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 gagctcttttcacattgtgctactgtct-aacgtgtaccgagcagtgcaatgttaaaagg 59
|||||||||||||||||||||||||||| || ||| | ||||||||||||||||||||
Sbjct: 13 gagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgttaaaagg 72
Query: 60 gcat 63
||||
Sbjct: 73 gcat 76
>33211_bta-mir-130a:mirbase
Length = 89
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 gagctcttttcacattgtgctactgtct-aacgtgtaccgagcagtgcaatgttaaaagg 59
|||||||||||||||||||||||||||| | ||| | ||||||||||||||||||||
Sbjct: 13 gagctcttttcacattgtgctactgtctgcgcctgtcactagcagtgcaatgttaaaagg 72
Query: 60 gcat 63
||||
Sbjct: 73 gcat 76
>33979_ssc-mir-130a:mirbase
Length = 79
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 gagctcttttcacattgtgctactgtct-aacgtgtaccgagcagtgcaatgttaaaagg 59
|||||||||||||||||||||||||||| || | | | ||||||||||||||||||||
Sbjct: 8 gagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgttaaaagg 67
Query: 60 gcat 63
||||
Sbjct: 68 gcat 71
>27022_eca-mir-130a:mirbase
Length = 64
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 gagctcttttcacattgtgctactgtct 28
||||||||||||||||||||||||||||
Sbjct: 1 gagctcttttcacattgtgctactgtct 28
>27380_mdo-mir-130a:mirbase
Length = 76
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 gagctcttttcacattgtgctactgtct 28
||||||||||||||||||||||||||||
Sbjct: 7 gagctcttttcacattgtgctactgtct 34
>31485_oan-mir-130a:mirbase
Length = 122
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 gagctcttttcacattgtgctactgtct 28
||||||||||||||||||||||||||||
Sbjct: 29 gagctcttttcacattgtgctactgtct 56
>26698_cfa-mir-130a:mirbase
Length = 62
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 gctcttttcacattgtgctactgtct 28
||||||||||||||||||||||||||
Sbjct: 1 gctcttttcacattgtgctactgtct 26
>25772_xtr-mir-130a:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 agcagtgcaatgttaaaagggcat 63
||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcat 74
>25949_gga-mir-130c:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 agcagtgcaatgttaaaagggcat 63
||||||||||||||||||||||||
Sbjct: 58 agcagtgcaatgttaaaagggcat 81
>26461_tgu-mir-130c:mirbase
Length = 112
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 agcagtgcaatgttaaaagggcat 63
||||||||||||||||||||||||
Sbjct: 79 agcagtgcaatgttaaaagggcat 102
>31486_oan-mir-130b:mirbase
Length = 129
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 agcagtgcaatgttaaaagggcat 63
||||||||||||||||||||||||
Sbjct: 79 agcagtgcaatgttaaaagggcat 102
>34289_dre-mir-130a-1:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 agcagtgcaatgttaaaagggcat 63
||||||||||||||||||||||||
Sbjct: 52 agcagtgcaatgttaaaagggcat 75
>34290_dre-mir-130a-2:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 agcagtgcaatgttaaaagggcat 63
||||||||||||||||||||||||
Sbjct: 52 agcagtgcaatgttaaaagggcat 75
>31487_oan-mir-130c:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gagcagtgcaatgttaaaagggcatc 64
||||||||||||| ||||||||||||
Sbjct: 50 gagcagtgcaatggtaaaagggcatc 75
>25947_gga-mir-130a:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 gagcagtgcaatgttaaaagggcat 63
|||||||||||| ||||||||||||
Sbjct: 49 gagcagtgcaatattaaaagggcat 73
>26459_tgu-mir-130a:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 gagcagtgcaatgttaaaagggcat 63
|||||||||||| ||||||||||||
Sbjct: 38 gagcagtgcaatattaaaagggcat 62
>34292_dre-mir-130c-1:mirbase
Length = 141
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 gagcagtgcaatgttaaaagggcat 63
|||||||||||| ||||||||||||
Sbjct: 77 gagcagtgcaatattaaaagggcat 101
>34293_dre-mir-130c-2:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 gagcagtgcaatgttaaaagggcat 63
|||||||||||| ||||||||||||
Sbjct: 47 gagcagtgcaatattaaaagggcat 71
>34595_fru-mir-130:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 gagcagtgcaatgttaaaagggcat 63
|||||||||||| ||||||||||||
Sbjct: 49 gagcagtgcaatattaaaagggcat 73
>34742_tni-mir-130:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 gagcagtgcaatgttaaaagggcat 63
|||||||||||| ||||||||||||
Sbjct: 46 gagcagtgcaatattaaaagggcat 70
>25774_xtr-mir-130c:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 40 agcagtgcaatgttaaaagggcat 63
||||||||||| ||||||||||||
Sbjct: 43 agcagtgcaatattaaaagggcat 66
