miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00258;mir-130;AL928914.15/23540-23459 10090:Mus musculus (house
          mouse)
          Length = 82

 Score =  127 bits (64), Expect = 2e-29
 Identities = 64/64 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gagctcttttcacattgtgctactgtctaacgtgtaccgagcagtgcaatgttaaaaggg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gagctcttttcacattgtgctactgtctaacgtgtaccgagcagtgcaatgttaaaaggg 69

              
Query: 61 catc 64
          ||||
Sbjct: 70 catc 73




>RF00258;mir-130;ABRQ01005074.1/1153-1071 9813:Procavia capensis
          (cape rock hyrax)
          Length = 83

 Score = 71.9 bits (36), Expect = 9e-13
 Identities = 58/64 (90%), Gaps = 1/64 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  gagctcttttcacattgtgctactgtct-aacgtgtaccgagcagtgcaatgttaaaagg 59
          ||||||||||||||||||||||||||||  || |||  | ||||||||||||||||||||
Sbjct: 10 gagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgttaaaagg 69

              
Query: 60 gcat 63
          ||||
Sbjct: 70 gcat 73




>RF00258;mir-130;AAPN01026753.1/160-77 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 84

 Score = 56.0 bits (28), Expect = 5e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 1  gagctcttttcacattgtgctactgtct 28
          ||||||||||||||||||||||||||||
Sbjct: 10 gagctcttttcacattgtgctactgtct 37




>RF00258;mir-130;AAPN01410230.1/3519-3435 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 85

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 40 agcagtgcaatgttaaaagggcat 63
          ||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcat 74




>RF00258;mir-130;AAFR03045417.1/53001-53085 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 85

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 40 agcagtgcaatgttaaaagggcat 63
          ||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcat 74




>RF00258;mir-130;AAWZ01039186.1/8009-8092 28377:Anolis
          carolinensis (green anole)
          Length = 84

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 40 agcagtgcaatgttaaaagggcat 63
          ||||||||||||||||||||||||
Sbjct: 33 agcagtgcaatgttaaaagggcat 10




>RF00258;mir-130;AAWZ01013434.1/100052-99970 28377:Anolis
          carolinensis (green anole)
          Length = 83

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 40 agcagtgcaatgttaaaagggcat 63
          ||||||||||||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcat 73



 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 3  gctcttttcacattgtgctactgtct 28
          ||||||||||||||||||| ||||||
Sbjct: 12 gctcttttcacattgtgcttctgtct 37




>RF00258;mir-130;ABQF01026522.1/2438-2357 59729:Taeniopygia
          guttata
          Length = 82

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 40 agcagtgcaatgttaaaagggcat 63
          ||||||||||||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcat 73




>RF00258;mir-130;AADN02025792.1/1337-1416 9031:Gallus gallus
          (chicken)
          Length = 80

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 40 agcagtgcaatgttaaaagggcat 63
          ||||||||||||||||||||||||
Sbjct: 47 agcagtgcaatgttaaaagggcat 70




>RF00258;mir-130;AC091299.2/31403-31320 7955:Danio rerio
          (zebrafish)
          Length = 84

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 40 agcagtgcaatgttaaaagggcat 63
          ||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcat 74




>RF00258;mir-130;AAFR03064223.1/4789-4711 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 79

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 41 gcagtgcaatgttaaaagggcat 63
          |||||||||||||||||||||||
Sbjct: 48 gcagtgcaatgttaaaagggcat 70




>RF00258;mir-130;AAPN01407153.1/607-682 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 76

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 39 gagcagtgcaatgttaaaagggcatc 64
          ||||||||||||| ||||||||||||
Sbjct: 43 gagcagtgcaatggtaaaagggcatc 68




>RF00258;mir-130;ACDA01000792.1/530-452 321403:Nothobranchius
          kuhntae (Beira killifish)
          Length = 79

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 38 cgagcagtgcaatgttaaaagggcat 63
          ||||||||||||| ||||||||||||
Sbjct: 45 cgagcagtgcaatattaaaagggcat 70




>RF00258;mir-130;BAAE01186101.1/50-128 8090:Oryzias latipes
          (Japanese medaka)
          Length = 79

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 39 gagcagtgcaatgttaaaagggcatc 64
          |||||||||||| |||||||||||||
Sbjct: 46 gagcagtgcaattttaaaagggcatc 71




>RF00258;mir-130;AADN02034765.1/1070-992 9031:Gallus gallus
          (chicken)
          Length = 79

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 39 gagcagtgcaatgttaaaagggcat 63
          |||||||||||| ||||||||||||
Sbjct: 46 gagcagtgcaatattaaaagggcat 70




>RF00258;mir-130;BX957246.7/158763-158685 7955:Danio rerio
          (zebrafish)
          Length = 79

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 39 gagcagtgcaatgttaaaagggcat 63
          |||||||||||| ||||||||||||
Sbjct: 46 gagcagtgcaatattaaaagggcat 70




>RF00258;mir-130;BX927385.15/233521-233443 7955:Danio rerio
          (zebrafish)
          Length = 79

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 39 gagcagtgcaatgttaaaagggcat 63
          |||||||||||| ||||||||||||
Sbjct: 46 gagcagtgcaatattaaaagggcat 70




>RF00258;mir-130;AANH01004639.1/10330-10408 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 79

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 39 gagcagtgcaatgttaaaagggcat 63
          |||||||||||| ||||||||||||
Sbjct: 46 gagcagtgcaatattaaaagggcat 70




>RF00258;mir-130;AANH01010010.1/106554-106477 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 78

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 39 gagcagtgcaatgttaaaagggcat 63
          |||||||||||| ||||||||||||
Sbjct: 44 gagcagtgcaatattaaaagggcat 68




>RF00258;mir-130;BAAE01282596.1/852-774 8090:Oryzias latipes
          (Japanese medaka)
          Length = 79

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 39 gagcagtgcaatgttaaaagggcat 63
          |||||||||||| ||||||||||||
Sbjct: 46 gagcagtgcaatattaaaagggcat 70