miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00258;mir-130;AL928914.15/23540-23459 10090:Mus musculus (house
mouse)
Length = 82
Score = 127 bits (64), Expect = 2e-29
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 1 gagctcttttcacattgtgctactgtctaacgtgtaccgagcagtgcaatgttaaaaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gagctcttttcacattgtgctactgtctaacgtgtaccgagcagtgcaatgttaaaaggg 69
Query: 61 catc 64
||||
Sbjct: 70 catc 73
>RF00258;mir-130;ABRQ01005074.1/1153-1071 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 71.9 bits (36), Expect = 9e-13
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 gagctcttttcacattgtgctactgtct-aacgtgtaccgagcagtgcaatgttaaaagg 59
|||||||||||||||||||||||||||| || ||| | ||||||||||||||||||||
Sbjct: 10 gagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgttaaaagg 69
Query: 60 gcat 63
||||
Sbjct: 70 gcat 73
>RF00258;mir-130;AAPN01026753.1/160-77 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 56.0 bits (28), Expect = 5e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 gagctcttttcacattgtgctactgtct 28
||||||||||||||||||||||||||||
Sbjct: 10 gagctcttttcacattgtgctactgtct 37
>RF00258;mir-130;AAPN01410230.1/3519-3435 9258:Ornithorhynchus
anatinus (platypus)
Length = 85
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 agcagtgcaatgttaaaagggcat 63
||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcat 74
>RF00258;mir-130;AAFR03045417.1/53001-53085 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 agcagtgcaatgttaaaagggcat 63
||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcat 74
>RF00258;mir-130;AAWZ01039186.1/8009-8092 28377:Anolis
carolinensis (green anole)
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 40 agcagtgcaatgttaaaagggcat 63
||||||||||||||||||||||||
Sbjct: 33 agcagtgcaatgttaaaagggcat 10
>RF00258;mir-130;AAWZ01013434.1/100052-99970 28377:Anolis
carolinensis (green anole)
Length = 83
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 agcagtgcaatgttaaaagggcat 63
||||||||||||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcat 73
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3 gctcttttcacattgtgctactgtct 28
||||||||||||||||||| ||||||
Sbjct: 12 gctcttttcacattgtgcttctgtct 37
>RF00258;mir-130;ABQF01026522.1/2438-2357 59729:Taeniopygia
guttata
Length = 82
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 agcagtgcaatgttaaaagggcat 63
||||||||||||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcat 73
>RF00258;mir-130;AADN02025792.1/1337-1416 9031:Gallus gallus
(chicken)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 agcagtgcaatgttaaaagggcat 63
||||||||||||||||||||||||
Sbjct: 47 agcagtgcaatgttaaaagggcat 70
>RF00258;mir-130;AC091299.2/31403-31320 7955:Danio rerio
(zebrafish)
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 agcagtgcaatgttaaaagggcat 63
||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcat 74
>RF00258;mir-130;AAFR03064223.1/4789-4711 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 79
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 gcagtgcaatgttaaaagggcat 63
|||||||||||||||||||||||
Sbjct: 48 gcagtgcaatgttaaaagggcat 70
>RF00258;mir-130;AAPN01407153.1/607-682 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gagcagtgcaatgttaaaagggcatc 64
||||||||||||| ||||||||||||
Sbjct: 43 gagcagtgcaatggtaaaagggcatc 68
>RF00258;mir-130;ACDA01000792.1/530-452 321403:Nothobranchius
kuhntae (Beira killifish)
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 38 cgagcagtgcaatgttaaaagggcat 63
||||||||||||| ||||||||||||
Sbjct: 45 cgagcagtgcaatattaaaagggcat 70
>RF00258;mir-130;BAAE01186101.1/50-128 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gagcagtgcaatgttaaaagggcatc 64
|||||||||||| |||||||||||||
Sbjct: 46 gagcagtgcaattttaaaagggcatc 71
>RF00258;mir-130;AADN02034765.1/1070-992 9031:Gallus gallus
(chicken)
Length = 79
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 gagcagtgcaatgttaaaagggcat 63
|||||||||||| ||||||||||||
Sbjct: 46 gagcagtgcaatattaaaagggcat 70
>RF00258;mir-130;BX957246.7/158763-158685 7955:Danio rerio
(zebrafish)
Length = 79
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 gagcagtgcaatgttaaaagggcat 63
|||||||||||| ||||||||||||
Sbjct: 46 gagcagtgcaatattaaaagggcat 70
>RF00258;mir-130;BX927385.15/233521-233443 7955:Danio rerio
(zebrafish)
Length = 79
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 gagcagtgcaatgttaaaagggcat 63
|||||||||||| ||||||||||||
Sbjct: 46 gagcagtgcaatattaaaagggcat 70
>RF00258;mir-130;AANH01004639.1/10330-10408 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 gagcagtgcaatgttaaaagggcat 63
|||||||||||| ||||||||||||
Sbjct: 46 gagcagtgcaatattaaaagggcat 70
>RF00258;mir-130;AANH01010010.1/106554-106477 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 gagcagtgcaatgttaaaagggcat 63
|||||||||||| ||||||||||||
Sbjct: 44 gagcagtgcaatattaaaagggcat 68
>RF00258;mir-130;BAAE01282596.1/852-774 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 gagcagtgcaatgttaaaagggcat 63
|||||||||||| ||||||||||||
Sbjct: 46 gagcagtgcaatattaaaagggcat 70
