miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32732_rno-mir-130b:mirbase
Length = 82
Score = 139 bits (70), Expect = 3e-34
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 1 ggcttgttggacactctttccctgttgcactactgtgggcctctgggaagcagtgcaatg 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcttgctggacactctttccctgttgcactactgtgggcctctgggaagcagtgcaatg 60
Query: 61 atgaaagggcatctgtcgggcc 82
||||||||||||| ||| ||||
Sbjct: 61 atgaaagggcatccgtcaggcc 82
>27729_mml-mir-130b:mirbase
Length = 82
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 10 gacactctttccctgttgcactactgtgggcctctgggaagcagtgcaatgatgaaaggg 69
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 10 gacactctttccctgttgcactactgtgggccactgggaagcagtgcaatgatgaaaggg 69
Query: 70 catc 73
||||
Sbjct: 70 catc 73
>33980_ssc-mir-130b:mirbase
Length = 80
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 10 gacactctttccctgttgcactactgtgggcctctgggaagcagtgcaatgatgaaaggg 69
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 9 gacactctttccctgttgcactactgtgggccactgggaagcagtgcaatgatgaaaggg 68
Query: 70 catc 73
||||
Sbjct: 69 catc 72
>26699_cfa-mir-130b:mirbase
Length = 60
Score = 111 bits (56), Expect = 8e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 13 actctttccctgttgcactactgtgggcctctgggaagcagtgcaatgatgaaagggcat 72
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 actctttccctgttgcactactgtgggccgctgggaagcagtgcaatgatgaaagggcat 60
>30219_ptr-mir-130b:mirbase
Length = 81
Score = 111 bits (56), Expect = 8e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 10 gacactctttccctgttgcactactgtgggcctctgggaagcagtgcaatgatgaaaggg 69
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 9 gacactctttccctgttgcactactatgggccgctgggaagcagtgcaatgatgaaaggg 68
Query: 70 catc 73
||||
Sbjct: 69 catc 72
>30828_ppy-mir-130b:mirbase
Length = 82
Score = 111 bits (56), Expect = 8e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 10 gacactctttccctgttgcactactgtgggcctctgggaagcagtgcaatgatgaaaggg 69
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 10 gacactctttccctgttgcactactatgggccgctgggaagcagtgcaatgatgaaaggg 69
Query: 70 catc 73
||||
Sbjct: 70 catc 73
>33212_bta-mir-130b:mirbase
Length = 82
Score = 105 bits (53), Expect = 5e-24
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 10 gacactctttccctgttgcactactgtgggcctctgggaagcagtgcaatgatgaaaggg 69
|||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct: 10 gacactctttccctgttgcactactgtgcgcccctggcaagcagtgcaatgatgaaaggg 69
Query: 70 catctgtcgggcc 82
|||| ||| ||||
Sbjct: 70 catcggtcaggcc 82
>28443_hsa-mir-130b:mirbase
Length = 82
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 10 gacactctttccctgttgcactactgtgggcctctgggaagcagtgcaatgatgaaaggg 69
||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||
Sbjct: 10 gacactctttccctgttgcactactataggccgctgggaagcagtgcaatgatgaaaggg 69
Query: 70 catc 73
||||
Sbjct: 70 catc 73
>27023_eca-mir-130b:mirbase
Length = 81
Score = 97.6 bits (49), Expect = 1e-21
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 10 gacactctttccctgttgcactactgtgggcctctgggaagcagtgcaatgatgaaaggg 69
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 10 gacactctttccctgttgcactactgtgggctgct-ggaagcagtgcaatgatgaaaggg 68
Query: 70 catctgtcgggcc 82
|||| ||| ||||
Sbjct: 69 catcggtcaggcc 81
>25773_xtr-mir-130b:mirbase
Length = 76
Score = 63.9 bits (32), Expect = 2e-11
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 10 gacactctttccctgttgcactactgtgggcctctgggaagcagtgcaatgatgaaaggg 69
||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 7 gacactctttccctgttgcactactgtggcagtgaataaagcagtgcaatgatgaaaggg 66
Query: 70 catc 73
||||
Sbjct: 67 catc 70
>34291_dre-mir-130b:mirbase
Length = 84
Score = 61.9 bits (31), Expect = 6e-11
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 10 gacactctttccctgttgcactactgtgg--gcctctgggaagcagtgcaatgatgaaag 67
||||||||||||||||||||||||||||| || | | |||||||||||| |||||||
Sbjct: 10 gacactctttccctgttgcactactgtgggagctgcagcaaagcagtgcaataatgaaag 69
Query: 68 ggcatc 73
||||||
Sbjct: 70 ggcatc 75
>25948_gga-mir-130b:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 ctctttccctgttgcactactgt 36
|||||||||||||||||||||||
Sbjct: 14 ctctttccctgttgcactactgt 36
>26460_tgu-mir-130b:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 ctctttccctgttgcactactgt 36
|||||||||||||||||||||||
Sbjct: 63 ctctttccctgttgcactactgt 85
>27113_eca-mir-301b:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 36/40 (90%), Gaps = 3/40 (7%)
Strand = Plus / Plus
Query: 23 tgttgcactactgtgggcctctgggaagcagtgcaatgat 62
||||||||||||||| ||||| ||||||||||||||||
Sbjct: 30 tgttgcactactgtg---ctctgagaagcagtgcaatgat 66
>27114_eca-mir-301b:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 36/40 (90%), Gaps = 3/40 (7%)
Strand = Plus / Plus
Query: 23 tgttgcactactgtgggcctctgggaagcagtgcaatgat 62
||||||||||||||| ||||| ||||||||||||||||
Sbjct: 30 tgttgcactactgtg---ctctgagaagcagtgcaatgat 66
>26789_cfa-mir-301b:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 6e-05
Identities = 35/39 (89%), Gaps = 3/39 (7%)
Strand = Plus / Plus
Query: 24 gttgcactactgtgggcctctgggaagcagtgcaatgat 62
|||||||||||||| ||||| ||||||||||||||||
Sbjct: 19 gttgcactactgtg---ctctgagaagcagtgcaatgat 54
>27830_mml-mir-301b:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 6e-05
Identities = 35/39 (89%), Gaps = 3/39 (7%)
Strand = Plus / Plus
Query: 24 gttgcactactgtgggcctctgggaagcagtgcaatgat 62
|||||||||||||| ||||| ||||||||||||||||
Sbjct: 20 gttgcactactgtg---ctctgagaagcagtgcaatgat 55
>28554_hsa-mir-301b:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 35/39 (89%), Gaps = 3/39 (7%)
Strand = Plus / Plus
Query: 24 gttgcactactgtgggcctctgggaagcagtgcaatgat 62
|||||||||||||| ||||| ||||||||||||||||
Sbjct: 21 gttgcactactgtg---ctctgagaagcagtgcaatgat 56
>30309_ptr-mir-301b:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 6e-05
Identities = 35/39 (89%), Gaps = 3/39 (7%)
Strand = Plus / Plus
Query: 24 gttgcactactgtgggcctctgggaagcagtgcaatgat 62
|||||||||||||| ||||| ||||||||||||||||
Sbjct: 20 gttgcactactgtg---ctctgagaagcagtgcaatgat 55
>30927_ppy-mir-301b:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 35/39 (89%), Gaps = 3/39 (7%)
Strand = Plus / Plus
Query: 24 gttgcactactgtgggcctctgggaagcagtgcaatgat 62
|||||||||||||| ||||| ||||||||||||||||
Sbjct: 21 gttgcactactgtg---ctctgagaagcagtgcaatgat 56
