miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00258;mir-130;AAFC03002359.1/2575-2495 9913:Bos taurus (cattle)
Length = 81
Score = 105 bits (53), Expect = 8e-23
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 10 gacactctttccctgttgcactactgtgggcctctgggaagcagtgcaatgatgaaaggg 69
|||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct: 9 gacactctttccctgttgcactactgtgcgcccctggcaagcagtgcaatgatgaaaggg 68
Query: 70 catctgtcgggcc 82
|||| ||| ||||
Sbjct: 69 catcggtcaggcc 81
>RF00258;mir-130;ABRO01142641.1/5547-5627 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 81
Score = 99.6 bits (50), Expect = 5e-21
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 11 acactctttccctgttgcactactgtgggcctctgggaagcagtgcaatgatgaaagggc 70
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 10 acactctttccctgttgcactactgtgggctgctggaaagcagtgcaatgatgaaagggc 69
Query: 71 at 72
||
Sbjct: 70 at 71
>RF00258;mir-130;AAGU02694209.1/964-1044 9785:Loxodonta africana
(African savanna elephant)
Length = 81
Score = 99.6 bits (50), Expect = 5e-21
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 11 acactctttccctgttgcactactgtgggcctctgggaagcagtgcaatgatgaaagggc 70
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 10 acactctttccctgttgcactactgtgggctgctaggaagcagtgcaatgatgaaagggc 69
Query: 71 at 72
||
Sbjct: 70 at 71
