miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00258;mir-130;AAFC03002359.1/2575-2495 9913:Bos taurus (cattle)
          Length = 81

 Score =  105 bits (53), Expect = 8e-23
 Identities = 68/73 (93%)
 Strand = Plus / Plus

                                                                      
Query: 10 gacactctttccctgttgcactactgtgggcctctgggaagcagtgcaatgatgaaaggg 69
          |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct: 9  gacactctttccctgttgcactactgtgcgcccctggcaagcagtgcaatgatgaaaggg 68

                       
Query: 70 catctgtcgggcc 82
          |||| ||| ||||
Sbjct: 69 catcggtcaggcc 81




>RF00258;mir-130;ABRO01142641.1/5547-5627 10020:Dipodomys ordii
          (Ord's kangaroo rat)
          Length = 81

 Score = 99.6 bits (50), Expect = 5e-21
 Identities = 59/62 (95%)
 Strand = Plus / Plus

                                                                      
Query: 11 acactctttccctgttgcactactgtgggcctctgggaagcagtgcaatgatgaaagggc 70
          ||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||
Sbjct: 10 acactctttccctgttgcactactgtgggctgctggaaagcagtgcaatgatgaaagggc 69

            
Query: 71 at 72
          ||
Sbjct: 70 at 71




>RF00258;mir-130;AAGU02694209.1/964-1044 9785:Loxodonta africana
          (African savanna elephant)
          Length = 81

 Score = 99.6 bits (50), Expect = 5e-21
 Identities = 59/62 (95%)
 Strand = Plus / Plus

                                                                      
Query: 11 acactctttccctgttgcactactgtgggcctctgggaagcagtgcaatgatgaaagggc 70
          ||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||
Sbjct: 10 acactctttccctgttgcactactgtgggctgctaggaagcagtgcaatgatgaaagggc 69

            
Query: 71 at 72
          ||
Sbjct: 70 at 71