miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32733_rno-mir-132:mirbase
Length = 101
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 gggcaaccgtggctttcgattgttactgtgggaaccggaggtaacagtctacagccatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 gggcaaccgtggctttcgattgttactgtgggaaccggaggtaacagtctacagccatgg 77
Query: 61 tcgccc 66
||||||
Sbjct: 78 tcgccc 83
>33213_bta-mir-132:mirbase
Length = 101
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 gggcaaccgtggctttcgattgttactgtgggaaccggaggtaacagtctacagccatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 gggcaaccgtggctttcgattgttactgtgggaaccggaggtaacagtctacagccatgg 77
Query: 61 tcgccc 66
||||||
Sbjct: 78 tcgccc 83
>27024_eca-mir-132:mirbase
Length = 66
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 4 caaccgtggctttcgattgttactgtgggaaccggaggtaacagtctacagccatggtcg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 caaccgtggctttcgattgttactgtgggaaccggaggtaacagtctacagccatggtcg 63
Query: 64 ccc 66
|||
Sbjct: 64 ccc 66
>27730_mml-mir-132:mirbase
Length = 101
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 gggcaaccgtggctttcgattgttactgtgggaaccggaggtaacagtctacagccatgg 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 18 gggcaaccgtggctttcgattgttactgtgggaactggaggtaacagtctacagccatgg 77
Query: 61 tcgccc 66
||||||
Sbjct: 78 tcgccc 83
>28444_hsa-mir-132:mirbase
Length = 101
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 gggcaaccgtggctttcgattgttactgtgggaaccggaggtaacagtctacagccatgg 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 18 gggcaaccgtggctttcgattgttactgtgggaactggaggtaacagtctacagccatgg 77
Query: 61 tcgccc 66
||||||
Sbjct: 78 tcgccc 83
>30829_ppy-mir-132:mirbase
Length = 101
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 gggcaaccgtggctttcgattgttactgtgggaaccggaggtaacagtctacagccatgg 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 18 gggcaaccgtggctttcgattgttactgtgggaactggaggtaacagtctacagccatgg 77
Query: 61 tcgccc 66
||||||
Sbjct: 78 tcgccc 83
>26700_cfa-mir-132:mirbase
Length = 60
Score = 119 bits (60), Expect = 2e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 5 aaccgtggctttcgattgttactgtgggaaccggaggtaacagtctacagccatggtcgc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaccgtggctttcgattgttactgtgggaaccggaggtaacagtctacagccatggtcgc 60
>27381_mdo-mir-132:mirbase
Length = 66
Score = 115 bits (58), Expect = 4e-27
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 1 gggcaaccgtggctttcgattgttactgtgggaaccggaggtaacagtctacagccatgg 60
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 1 gggcaaccgtggctttcgattgttactgtgggaaccaggggtaacagtctacagccatgg 60
Query: 61 tcgccc 66
||||||
Sbjct: 61 tcgccc 66
>34295_dre-mir-132-2:mirbase
Length = 119
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 ggtaacagtctacagccatggtcgcc 65
||||||||||||||||||||||||||
Sbjct: 64 ggtaacagtctacagccatggtcgcc 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 accgtggctttcgattgttactgt 29
||||||||||| ||||||||||||
Sbjct: 27 accgtggctttagattgttactgt 50
>25775_xtr-mir-132:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gggcaaccgtggctttcgattgttactgt 29
|||||||||||||||| ||||||||||||
Sbjct: 10 gggcaaccgtggctttagattgttactgt 38
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 ggtaacagtctacagccatggtcgc 64
|||||||||||||||||||||||||
Sbjct: 50 ggtaacagtctacagccatggtcgc 74
>34294_dre-mir-132-1:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 ggtaacagtctacagccatggtcgc 64
|||||||||||||||||||||||||
Sbjct: 52 ggtaacagtctacagccatggtcgc 76
>34596_fru-mir-132:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 ggtaacagtctacagccatggtcgc 64
|||||||||||||||||||||||||
Sbjct: 52 ggtaacagtctacagccatggtcgc 76
>34743_tni-mir-132:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 ggtaacagtctacagccatggtcgc 64
|||||||||||||||||||||||||
Sbjct: 52 ggtaacagtctacagccatggtcgc 76
>25484_pma-mir-132:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 41 gtaacagtctacagccatgg 60
||||||||||||||||||||
Sbjct: 59 gtaacagtctacagccatgg 78
