miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00662;mir-132;ABDC01230941.1/4406-4323 30608:Microcebus murinus
(gray mouse lemur)
Length = 84
Score = 115 bits (58), Expect = 7e-26
Identities = 65/66 (98%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 gggcaaccgtggctttcgattgttactgtgggaaccggaggtaacagtctacagccatgg 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gggcaaccgtggctt-cgattgttactgtgggaaccggaggtaacagtctacagccatgg 69
Query: 61 tcgccc 66
||||||
Sbjct: 70 tcgccc 75
>RF00662;mir-132;ABRQ01002353.1/3260-3176 9813:Procavia capensis
(cape rock hyrax)
Length = 85
Score = 109 bits (55), Expect = 4e-24
Identities = 65/67 (97%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gggcaaccgtggctttcgattgttactgt-gggaaccggaggtaacagtctacagccatg 59
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 11 gggcaaccgtggctatcgattgttactgtagggaaccggaggtaacagtctacagccatg 70
Query: 60 gtcgccc 66
|||||||
Sbjct: 71 gtcgccc 77
>RF00662;mir-132;AADB02296530.1/487-405 9606:Homo sapiens (human)
Length = 83
Score = 79.8 bits (40), Expect = 4e-15
Identities = 50/52 (96%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 15 ttcgattgttactgtgggaaccggaggtaacagtctacagccatggtcgccc 66
||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 25 ttcgattgttactgtgg-aactggaggtaacagtctacagccatggtcgccc 75
>RF00662;mir-132;AAQR01668865.1/3729-3647 30611:Otolemur garnettii
(small-eared galago)
Length = 83
Score = 75.8 bits (38), Expect = 6e-14
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 gggcaaccgtggctttcgattgttactgtgggaaccggaggtaacagtctacagccatgg 60
||||||||||||||||||||||||||||| |||||||||| ||||| |||||| ||||
Sbjct: 11 gggcaaccgtggctttcgattgttactgt-ggaaccggagtaaacagcctacagtcatga 69
Query: 61 tcgccc 66
||||||
Sbjct: 70 tcgccc 75
>RF00662;mir-132;CAAK05007784.1/3165-3252 7955:Danio rerio
(zebrafish)
Length = 88
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 ggtaacagtctacagccatggtcgcc 65
||||||||||||||||||||||||||
Sbjct: 53 ggtaacagtctacagccatggtcgcc 78
>RF00662;mir-132;BX088586.8/108540-108629 7955:Danio rerio
(zebrafish)
Length = 90
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 ggtaacagtctacagccatggtcgc 64
|||||||||||||||||||||||||
Sbjct: 55 ggtaacagtctacagccatggtcgc 79
>RF00662;mir-132;BAAE01031130.1/4187-4276 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 ggtaacagtctacagccatggtcgc 64
|||||||||||||||||||||||||
Sbjct: 55 ggtaacagtctacagccatggtcgc 79
>RF00662;mir-132;CAAB01000451.1/6761-6672 31033:Takifugu rubripes
Length = 90
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 ggtaacagtctacagccatggtcg 63
||||||||||||||||||||||||
Sbjct: 55 ggtaacagtctacagccatggtcg 78
>RF00662;mir-132;BAAE01045097.1/6371-6283 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 ggtaacagtctacagccatggtcg 63
||||||||||||||||||||||||
Sbjct: 54 ggtaacagtctacagccatggtcg 77
>RF00662;mir-132;AAVX01086956.1/967-1052 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 gtaacagtctacagccatggt 61
|||||||||||||||||||||
Sbjct: 52 gtaacagtctacagccatggt 72
