miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;AAVX01020289.1/2798-2712 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 103 bits (52), Expect = 3e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 1 gctaaagctggtaaaatggaaccaaatcgcctcttcaatggatttggtccccttcaacca 60
|||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct: 9 gctaaagctggtaaaatggaaccaaatcaactattctatggatttggtccccttcaacca 68
Query: 61 gctgtagc 68
||||||||
Sbjct: 69 gctgtagc 76
>RF00446;mir-133;AAQQ01431588.1/1752-1838 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 87
Score = 87.7 bits (44), Expect = 2e-17
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 5 aagctggtaaaatggaaccaaatcgcctcttcaatggatttggtccccttcaaccagctg 64
|||||||| |||||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 13 aagctggtcaaatggaaccaaatcggctgctcactggatttggtccccttcaaccagctg 72
Query: 65 tagc 68
||||
Sbjct: 73 tagc 76
>RF00446;mir-133;AAIY01559715.1/853-939 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 71.9 bits (36), Expect = 9e-13
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1 gctaaagctggtaaaatggaaccaaatcgcctcttcaatggatttggtccccttcaacca 60
|||| ||||||||||||||||||| |||| | | |||||||||||||||||||||||
Sbjct: 9 gctagagctggtaaaatggaaccagatcggccgtatgatggatttggtccccttcaacca 68
Query: 61 gctgtagc 68
||||||||
Sbjct: 69 gctgtagc 76
>RF00446;mir-133;AAVX01266048.1/613-699 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 40 ggatttggtccccttcaaccagctgtagc 68
|||||||||||||||||||||||||||||
Sbjct: 48 ggatttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;ABKQ02016003.1/5336-5232 377270:Anopheles gambiae
S
Length = 105
Score = 56.0 bits (28), Expect = 6e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 37 aatggatttggtccccttcaaccagctgtagc 68
|||| |||||||||||||||||||||||||||
Sbjct: 63 aatgcatttggtccccttcaaccagctgtagc 94
>RF00446;mir-133;AAWZ01040028.1/1304-1218 28377:Anolis
carolinensis (green anole)
Length = 87
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 tggatttggtccccttcaaccagctgt 65
|||||||||||||||||||||||||||
Sbjct: 47 tggatttggtccccttcaaccagctgt 73
>RF00446;mir-133;ABLF01021874.1/5675-5746 7029:Acyrthosiphon pisum
(pea aphid)
Length = 72
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 atttggtccccttcaaccagctgtagc 68
|||||||||||||||||||||||||||
Sbjct: 35 atttggtccccttcaaccagctgtagc 61
>RF00446;mir-133;AAGE02024522.1/50344-50238 7159:Aedes aegypti
(yellow fever mosquito)
Length = 107
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 atttggtccccttcaaccagctgtagc 68
|||||||||||||||||||||||||||
Sbjct: 70 atttggtccccttcaaccagctgtagc 96
>RF00446;mir-133;AAPP01015693.1/86515-86606 7217:Drosophila
ananassae
Length = 92
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 atttggtccccttcaaccagctgtagc 68
|||||||||||||||||||||||||||
Sbjct: 55 atttggtccccttcaaccagctgtagc 81
>RF00446;mir-133;AAQB01006401.1/332784-332872 7260:Drosophila
willistoni
Length = 89
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 atttggtccccttcaaccagctgtagc 68
|||||||||||||||||||||||||||
Sbjct: 52 atttggtccccttcaaccagctgtagc 78
>RF00446;mir-133;AASW01052175.1/117-202 7240:Drosophila simulans
Length = 86
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 atttggtccccttcaaccagctgtagc 68
|||||||||||||||||||||||||||
Sbjct: 49 atttggtccccttcaaccagctgtagc 75
>RF00446;mir-133;AAPT01020977.1/40333-40419 7222:Drosophila
grimshawi
Length = 87
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 atttggtccccttcaaccagctgtagc 68
|||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;AAPU01010689.1/170290-170375 7230:Drosophila
mojavensis
Length = 86
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 atttggtccccttcaaccagctgtagc 68
|||||||||||||||||||||||||||
Sbjct: 49 atttggtccccttcaaccagctgtagc 75
>RF00446;mir-133;AAPN01136163.1/2110-2024 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 52.0 bits (26), Expect = 9e-07
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 7 gctggtaaaatggaaccaaatcgcctcttcaatggatttggtccccttcaaccagctg 64
|||||| ||| ||||||| ||||||||| || ||||||||||||||||||| ||||
Sbjct: 15 gctggtcaaaaggaaccagatcgcctctccacctgatttggtccccttcaaccggctg 72
>RF00446;mir-133;AADN02043827.1/38919-38834 9031:Gallus gallus
(chicken)
Length = 86
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 tggatttggtccccttcaaccagctg 64
||||||||||||||||||||||||||
Sbjct: 46 tggatttggtccccttcaaccagctg 71
>RF00446;mir-133;AAZO01007144.1/88847-88936 121224:Pediculus
humanus corporis (human body louse)
Length = 90
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 atttggtccccttcaaccagctgtag 67
||||||||||||||||||||||||||
Sbjct: 53 atttggtccccttcaaccagctgtag 78
>RF00446;mir-133;BABH01010529.1/47109-47021 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 atttggtccccttcaaccagctgtag 67
||||||||||||||||||||||||||
Sbjct: 52 atttggtccccttcaaccagctgtag 77
>RF00446;mir-133;AADG05005567.1/35761-35851 7460:Apis mellifera
(honey bee)
Length = 91
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 atttggtccccttcaaccagctgtag 67
||||||||||||||||||||||||||
Sbjct: 54 atttggtccccttcaaccagctgtag 79
>RF00446;mir-133;AAGJ02035428.1/18887-18799
7668:Strongylocentrotus purpuratus
Length = 89
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 40 ggatttggtccccttcaaccagctgtagc 68
||||||||||||||||||||||| |||||
Sbjct: 50 ggatttggtccccttcaaccagccgtagc 78
>RF00446;mir-133;AAFS01007554.1/884-971 46245:Drosophila
pseudoobscura pseudoobscura
Length = 88
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 atttggtccccttcaaccagctgta 66
|||||||||||||||||||||||||
Sbjct: 51 atttggtccccttcaaccagctgta 75
>RF00446;mir-133;CAAE01007044.1/175-261 99883:Tetraodon
nigroviridis
Length = 87
Score = 48.1 bits (24), Expect = 1e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 6 agctggtaaaatggaaccaaatcgcctcttcaatggatttggtccccttcaaccag 61
||||||| ||||||||||| ||| ||| | |||||||||||||||||||||||
Sbjct: 14 agctggtcaaatggaaccagatctccttctgtctggatttggtccccttcaaccag 69
>RF00446;mir-133;AAWU01037751.1/37190-37294 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 105
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 atttggtccccttcaaccagctgt 65
||||||||||||||||||||||||
Sbjct: 71 atttggtccccttcaaccagctgt 94
>RF00446;mir-133;AAJJ01000046.1/77209-77292 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 atttggtccccttcaaccagctgt 65
||||||||||||||||||||||||
Sbjct: 47 atttggtccccttcaaccagctgt 70
>RF00446;mir-133;ABJB010482881.1/10984-10878 6945:Ixodes
scapularis (black-legged tick)
Length = 107
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 atttggtccccttcaaccagctgt 65
||||||||||||||||||||||||
Sbjct: 70 atttggtccccttcaaccagctgt 93
>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
intestinalis
Length = 92
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 tttggtccccttcaaccagctg 64
||||||||||||||||||||||
Sbjct: 56 tttggtccccttcaaccagctg 77
>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
(chicken)
Length = 88
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 tttggtccccttcaaccagctgtagc 68
||||||||||||||||||||| ||||
Sbjct: 52 tttggtccccttcaaccagctatagc 77
>RF00446;mir-133;AACT01038735.1/1889-1809 51511:Ciona savignyi
Length = 81
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 tttggtccccttcaaccagct 63
|||||||||||||||||||||
Sbjct: 47 tttggtccccttcaaccagct 67
>RF00446;mir-133;ABRQ01222469.1/2189-2276 9813:Procavia capensis
(cape rock hyrax)
Length = 88
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 tttggtccccttcaaccagct 63
|||||||||||||||||||||
Sbjct: 52 tttggtccccttcaaccagct 72
>RF00446;mir-133;AANH01006842.1/37352-37440 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 89
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 tttggtccccttcaaccagct 63
|||||||||||||||||||||
Sbjct: 53 tttggtccccttcaaccagct 73
>RF00446;mir-133;BAAF04047944.1/3038-2950 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 tttggtccccttcaaccagct 63
|||||||||||||||||||||
Sbjct: 53 tttggtccccttcaaccagct 73
