miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;ABRQ01222469.1/2189-2276 9813:Procavia capensis
(cape rock hyrax)
Length = 88
Score = 172 bits (87), Expect = 7e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 16 gccccctgctctggctggtcaaacggaaccaagtccgtcttcctgagaggtttggtcccc 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gccccctgctctggctggtcaaacggaaccaagtccgtcttcctgagaggtttggtcccc 61
Query: 76 ttcaaccagctacagcagggctggcaa 102
|||||||||||||||||||||||||||
Sbjct: 62 ttcaaccagctacagcagggctggcaa 88
>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
(chicken)
Length = 88
Score = 105 bits (53), Expect = 1e-22
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 21 ctgctctggctggtcaaacggaaccaagtccgtcttcctgagaggtttggtccccttcaa 80
|||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||
Sbjct: 7 ctgctctggctggtcaaacggaaccaagcccgtcttcttcggaggtttggtccccttcaa 66
Query: 81 ccagctacagcag 93
||||||| |||||
Sbjct: 67 ccagctatagcag 79
>RF00446;mir-133;AAWZ01012531.1/25343-25256 28377:Anolis
carolinensis (green anole)
Length = 88
Score = 83.8 bits (42), Expect = 5e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 20 cctgctctggctggtcaaacggaaccaagtccgtcttcctgagaggtttggtccccttca 79
||||||||||||||||||| ||||||| | | |||||||| ||||||||||||||| |
Sbjct: 6 cctgctctggctggtcaaagggaaccacggctgtcttccttgaaggtttggtccccttta 65
Query: 80 accagctacagcag 93
||||||||||||||
Sbjct: 66 accagctacagcag 79
>RF00446;mir-133;BAAF04047944.1/3038-2950 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 79.8 bits (40), Expect = 7e-15
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 22 tgctctggctggtcaaacggaaccaagtccg-tcttcctgagaggtttggtccccttcaa 80
|||| |||||||||||||||||||||||| | | || | |||||||||||||||||||||
Sbjct: 8 tgctgtggctggtcaaacggaaccaagtcaggtgtttcagagaggtttggtccccttcaa 67
Query: 81 ccagctac 88
||||||||
Sbjct: 68 ccagctac 75
>RF00446;mir-133;AANH01006842.1/37352-37440 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 89
Score = 77.8 bits (39), Expect = 3e-14
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 27 tggctggtcaaacggaaccaagtccg-tcttcctgagaggtttggtccccttcaaccagc 85
|||||||||||||||||||||||| | | || ||| ||||||||||||||||||||||||
Sbjct: 13 tggctggtcaaacggaaccaagtcaggtgtttctgtgaggtttggtccccttcaaccagc 72
Query: 86 tac 88
|||
Sbjct: 73 tac 75
>RF00446;mir-133;AACT01038735.1/1889-1809 51511:Ciona savignyi
Length = 81
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 64 ggtttggtccccttcaaccagctac 88
|||||||||||||||||||||||||
Sbjct: 45 ggtttggtccccttcaaccagctac 69
>RF00446;mir-133;CAAK05040482.1/11317-11401 7955:Danio rerio
(zebrafish)
Length = 85
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 60 gagaggtttggtccccttcaaccagctac 88
||||||||||||||| |||||||||||||
Sbjct: 45 gagaggtttggtccctttcaaccagctac 73
>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
intestinalis
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 ggtttggtccccttcaaccagct 86
|||||||||||||||||||||||
Sbjct: 54 ggtttggtccccttcaaccagct 76
