miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>26705_cfa-mir-135a-1:mirbase
          Length = 87

 Score =  131 bits (66), Expect = 9e-32
 Identities = 78/82 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  aggcctcactgttctctatggctttttattcctatgtgattctattgctcgctcatatag 60
          ||||||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 1  aggcctcgctgttctctatggctttttattcctatgtgattttactgctcactcatatag 60

                                
Query: 61 ggattggagccgtggcgtacgg 82
          ||||||||||||||||||||||
Sbjct: 61 ggattggagccgtggcgtacgg 82




>27512_age-mir-135-1:mirbase
          Length = 90

 Score =  131 bits (66), Expect = 9e-32
 Identities = 78/82 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  aggcctcactgttctctatggctttttattcctatgtgattctattgctcgctcatatag 60
          ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1  aggcctcgctgttctctatggctttttattcctatgtgattctactgctcactcatatag 60

                                
Query: 61 ggattggagccgtggcgtacgg 82
          ||||||||||||||||| ||||
Sbjct: 61 ggattggagccgtggcgcacgg 82




>27574_lla-mir-135-1:mirbase
          Length = 90

 Score =  131 bits (66), Expect = 9e-32
 Identities = 78/82 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  aggcctcactgttctctatggctttttattcctatgtgattctattgctcgctcatatag 60
          ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1  aggcctcgctgttctctatggctttttattcctatgtgattctactgctcactcatatag 60

                                
Query: 61 ggattggagccgtggcgtacgg 82
          ||||||||||||||||| ||||
Sbjct: 61 ggattggagccgtggcgcacgg 82




>27735_mml-mir-135a-1:mirbase
          Length = 90

 Score =  131 bits (66), Expect = 9e-32
 Identities = 78/82 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  aggcctcactgttctctatggctttttattcctatgtgattctattgctcgctcatatag 60
          ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1  aggcctcgctgttctctatggctttttattcctatgtgattctactgctcactcatatag 60

                                
Query: 61 ggattggagccgtggcgtacgg 82
          ||||||||||||||||| ||||
Sbjct: 61 ggattggagccgtggcgcacgg 82




>28449_hsa-mir-135a-1:mirbase
          Length = 90

 Score =  131 bits (66), Expect = 9e-32
 Identities = 78/82 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  aggcctcactgttctctatggctttttattcctatgtgattctattgctcgctcatatag 60
          ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1  aggcctcgctgttctctatggctttttattcctatgtgattctactgctcactcatatag 60

                                
Query: 61 ggattggagccgtggcgtacgg 82
          ||||||||||||||||| ||||
Sbjct: 61 ggattggagccgtggcgcacgg 82




>30093_ppa-mir-135-1:mirbase
          Length = 90

 Score =  131 bits (66), Expect = 9e-32
 Identities = 78/82 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  aggcctcactgttctctatggctttttattcctatgtgattctattgctcgctcatatag 60
          ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1  aggcctcgctgttctctatggctttttattcctatgtgattctactgctcactcatatag 60

                                
Query: 61 ggattggagccgtggcgtacgg 82
          ||||||||||||||||| ||||
Sbjct: 61 ggattggagccgtggcgcacgg 82




>30224_ptr-mir-135a-1:mirbase
          Length = 89

 Score =  131 bits (66), Expect = 9e-32
 Identities = 78/82 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  aggcctcactgttctctatggctttttattcctatgtgattctattgctcgctcatatag 60
          ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1  aggcctcgctgttctctatggctttttattcctatgtgattctactgctcactcatatag 60

                                
Query: 61 ggattggagccgtggcgtacgg 82
          ||||||||||||||||| ||||
Sbjct: 61 ggattggagccgtggcgcacgg 82




>30835_ppy-mir-135a-1:mirbase
          Length = 90

 Score =  131 bits (66), Expect = 9e-32
 Identities = 78/82 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  aggcctcactgttctctatggctttttattcctatgtgattctattgctcgctcatatag 60
          ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1  aggcctcgctgttctctatggctttttattcctatgtgattctactgctcactcatatag 60

                                
Query: 61 ggattggagccgtggcgtacgg 82
          ||||||||||||||||| ||||
Sbjct: 61 ggattggagccgtggcgcacgg 82




>33218_bta-mir-135a-1:mirbase
          Length = 90

 Score =  131 bits (66), Expect = 9e-32
 Identities = 78/82 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  aggcctcactgttctctatggctttttattcctatgtgattctattgctcgctcatatag 60
          ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1  aggcctcgctgttctctatggctttttattcctatgtgattctactgctcactcatatag 60

                                
Query: 61 ggattggagccgtggcgtacgg 82
          ||||||||||||||||| ||||
Sbjct: 61 ggattggagccgtggcgcacgg 82




>33986_ssc-mir-135-1:mirbase
          Length = 90

 Score =  123 bits (62), Expect = 2e-29
 Identities = 77/82 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  aggcctcactgttctctatggctttttattcctatgtgattctattgctcgctcatatag 60
          ||||||| |||||||||||||||||||||||||||||||||||| |||||  ||||||||
Sbjct: 1  aggcctcgctgttctctatggctttttattcctatgtgattctactgctcattcatatag 60

                                
Query: 61 ggattggagccgtggcgtacgg 82
          ||||||||||||||||| ||||
Sbjct: 61 ggattggagccgtggcgcacgg 82




>27029_eca-mir-135a:mirbase
          Length = 60

 Score =  103 bits (52), Expect = 2e-23
 Identities = 58/60 (96%)
 Strand = Plus / Plus

                                                                      
Query: 16 ctatggctttttattcctatgtgattctattgctcgctcatatagggattggagccgtgg 75
          ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 1  ctatggctttttattcctatgtgattctactgctcactcatatagggattggagccgtgg 60




>25954_gga-mir-135a-1:mirbase
          Length = 88

 Score = 65.9 bits (33), Expect = 5e-12
 Identities = 64/73 (87%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  gcctcactgttctctatggctttttattcctatgtgattctattgctcgc-tcatatagg 61
          |||||||||| || ||||||||||||||||||||||||| ||   | ||| |||||||||
Sbjct: 1  gcctcactgtcctgtatggctttttattcctatgtgattatacatcccgcttcatatagg 60

                       
Query: 62 gattggagccgtg 74
          ||||| |||||||
Sbjct: 61 gattgaagccgtg 73




>25956_gga-mir-135a-3:mirbase
          Length = 96

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 15 tctatggctttttattcctatgtgatt 41
          |||||||||||||||||||||||||||
Sbjct: 14 tctatggctttttattcctatgtgatt 40




>31492_oan-mir-135b:mirbase
          Length = 114

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 ctatggctttttattcctatgtgatt 41
          ||||||||||||||||||||||||||
Sbjct: 30 ctatggctttttattcctatgtgatt 55




>25487_pma-mir-135a:mirbase
          Length = 86

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 17 tatggctttttattcctatgtgatt 41
          |||||||||||||||||||||||||
Sbjct: 15 tatggctttttattcctatgtgatt 39




>25781_xtr-mir-135-2:mirbase
          Length = 88

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 17 tatggctttttattcctatgtgatt 41
          |||||||||||||||||||||||||
Sbjct: 16 tatggctttttattcctatgtgatt 40




>26466_tgu-mir-135a-2:mirbase
          Length = 86

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 17 tatggctttttattcctatgtgatt 41
          |||||||||||||||||||||||||
Sbjct: 15 tatggctttttattcctatgtgatt 39




>26467_tgu-mir-135b:mirbase
          Length = 73

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 17 tatggctttttattcctatgtgatt 41
          |||||||||||||||||||||||||
Sbjct: 11 tatggctttttattcctatgtgatt 35




>25780_xtr-mir-135-1:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>25955_gga-mir-135a-2:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>25957_gga-mir-135b:mirbase
          Length = 67

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 10 tgttctctatggctttttattcct 33
          ||||||||||||||||||||||||
Sbjct: 38 tgttctctatggctttttattcct 61




>26465_tgu-mir-135a-1:mirbase
          Length = 73

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 11 tatggctttttattcctatgtgat 34




>26706_cfa-mir-135a-2:mirbase
          Length = 62

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 2  tatggctttttattcctatgtgat 25




>26707_cfa-mir-135a-2:mirbase
          Length = 62

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 2  tatggctttttattcctatgtgat 25




>27030_eca-mir-135a-2:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>27383_mdo-mir-135a:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>27513_age-mir-135-2:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>27575_lla-mir-135-2:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>27736_mml-mir-135a-2:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>28306_ggo-mir-135:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>28450_hsa-mir-135a-2:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>30094_ppa-mir-135-2:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>30225_ptr-mir-135a-2:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>30834_ppy-mir-135:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>31491_oan-mir-135a:mirbase
          Length = 109

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 29 tatggctttttattcctatgtgat 52




>31864_mmu-mir-135a-2:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>32737_rno-mir-135a:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>33219_bta-mir-135a-2:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>33987_ssc-mir-135-2:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>34300_dre-mir-135a:mirbase
          Length = 98

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 17 tatggctttttattcctatgtga 39
          |||||||||||||||||||||||
Sbjct: 16 tatggctttttattcctatgtga 38




>26708_cfa-mir-135b:mirbase
          Length = 89

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 ctatggctttttattcctatgtgatt 41
          ||||||||||| ||||||||||||||
Sbjct: 14 ctatggcttttcattcctatgtgatt 39




>27031_eca-mir-135b:mirbase
          Length = 89

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 ctatggctttttattcctatgtgatt 41
          ||||||||||| ||||||||||||||
Sbjct: 14 ctatggcttttcattcctatgtgatt 39




>27384_mdo-mir-135b:mirbase
          Length = 100

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 ctatggctttttattcctatgtgatt 41
          ||||||||||| ||||||||||||||
Sbjct: 17 ctatggcttttcattcctatgtgatt 42




>27737_mml-mir-135b:mirbase
          Length = 97

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 ctatggctttttattcctatgtgatt 41
          ||||||||||| ||||||||||||||
Sbjct: 15 ctatggcttttcattcctatgtgatt 40




>28451_hsa-mir-135b:mirbase
          Length = 97

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 ctatggctttttattcctatgtgatt 41
          ||||||||||| ||||||||||||||
Sbjct: 15 ctatggcttttcattcctatgtgatt 40




>30226_ptr-mir-135b:mirbase
          Length = 96

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 ctatggctttttattcctatgtgatt 41
          ||||||||||| ||||||||||||||
Sbjct: 15 ctatggcttttcattcctatgtgatt 40




>30836_ppy-mir-135b:mirbase
          Length = 97

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 ctatggctttttattcctatgtgatt 41
          ||||||||||| ||||||||||||||
Sbjct: 15 ctatggcttttcattcctatgtgatt 40




>31865_mmu-mir-135b:mirbase
          Length = 97

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 ctatggctttttattcctatgtgatt 41
          ||||||||||| ||||||||||||||
Sbjct: 15 ctatggcttttcattcctatgtgatt 40




>32738_rno-mir-135b:mirbase
          Length = 97

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 ctatggctttttattcctatgtgatt 41
          ||||||||||| ||||||||||||||
Sbjct: 15 ctatggcttttcattcctatgtgatt 40




>33220_bta-mir-135b:mirbase
          Length = 95

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 ctatggctttttattcctatgtgatt 41
          ||||||||||| ||||||||||||||
Sbjct: 13 ctatggcttttcattcctatgtgatt 38




>34304_dre-mir-135c-3:mirbase
          Length = 127

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 8  actgttctctatggctttttattcctatgtgatt 41
          ||||| || ||||||||| |||||||||||||||
Sbjct: 27 actgtgctttatggctttctattcctatgtgatt 60




>34302_dre-mir-135c-1:mirbase
          Length = 80

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 17 tatggctttttattcctatgtgatt 41
          ||||||||| |||||||||||||||
Sbjct: 11 tatggctttctattcctatgtgatt 35




>34303_dre-mir-135c-2:mirbase
          Length = 80

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 17 tatggctttttattcctatgtgatt 41
          ||||||||| |||||||||||||||
Sbjct: 11 tatggctttctattcctatgtgatt 35




>34598_fru-mir-135a:mirbase
          Length = 79

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 17 tatggctttttattcctatgtgatt 41
          ||||||||| |||||||||||||||
Sbjct: 11 tatggctttctattcctatgtgatt 35




>34745_tni-mir-135a:mirbase
          Length = 79

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 17 tatggctttttattcctatgtgatt 41
          ||||||||| |||||||||||||||
Sbjct: 11 tatggctttctattcctatgtgatt 35




>25488_pma-mir-135b:mirbase
          Length = 87

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          |||||||||||||||||| |||||
Sbjct: 12 tatggctttttattcctacgtgat 35




>34599_fru-mir-135b:mirbase
          Length = 83

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                          
Query: 17 tatggctttttattcctatgtgattctattgctcgctcatatagggat 64
          ||||||||||||||||||| ||| | || || | | ||||||||||||
Sbjct: 16 tatggctttttattcctatctgactgtactgatagttcatatagggat 63