miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00246;mir-135;ABRQ01460659.1/5464-5553 9813:Procavia capensis
          (cape rock hyrax)
          Length = 90

 Score =  131 bits (66), Expect = 2e-30
 Identities = 78/82 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  aggcctcactgttctctatggctttttattcctatgtgattctattgctcgctcatatag 60
          ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1  aggcctcgctgttctctatggctttttattcctatgtgattctactgctcactcatatag 60

                                
Query: 61 ggattggagccgtggcgtacgg 82
          ||||||||||||||||| ||||
Sbjct: 61 ggattggagccgtggcgcacgg 82




>RF00246;mir-135;AAPN01299361.1/1140-1229 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 90

 Score = 91.7 bits (46), Expect = 1e-18
 Identities = 61/66 (92%)
 Strand = Plus / Plus

                                                                      
Query: 9  ctgttctctatggctttttattcctatgtgattctattgctcgctcatatagggattgga 68
          |||| ||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||
Sbjct: 9  ctgtgctctatggctttttattcctatgtgatcctgctgctcactcatatagggattgga 68

                
Query: 69 gccgtg 74
          ||||||
Sbjct: 69 gccgtg 74




>RF00246;mir-135;AAIY01659495.1/471-383 9371:Echinops telfairi
          (small Madagascar hedgehog)
          Length = 89

 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 75/84 (89%), Gaps = 1/84 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  aggcctcactgttctctatggctttttattcctatgtgattctattgctcgctcatatag 60
          ||||||| ||| |||||||||||||| ||||||||||||||||| || || |||| ||||
Sbjct: 1  aggcctcgctgctctctatggcttttcattcctatgtgattcta-tggtcactcacatag 59

                                  
Query: 61 ggattggagccgtggcgtacggtg 84
          |||| |||||||||||| ||||||
Sbjct: 60 ggatgggagccgtggcggacggtg 83




>RF00246;mir-135;AADN02056441.1/1410-1500 9031:Gallus gallus
          (chicken)
          Length = 91

 Score = 65.9 bits (33), Expect = 8e-11
 Identities = 64/73 (87%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  gcctcactgttctctatggctttttattcctatgtgattctattgctcgc-tcatatagg 61
          |||||||||| || ||||||||||||||||||||||||| ||   | ||| |||||||||
Sbjct: 3  gcctcactgtcctgtatggctttttattcctatgtgattatacatcccgcttcatatagg 62

                       
Query: 62 gattggagccgtg 74
          ||||| |||||||
Sbjct: 63 gattgaagccgtg 75




>RF00246;mir-135;AAWZ01006677.1/107967-108057 28377:Anolis
          carolinensis (green anole)
          Length = 91

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 15 tctatggctttttattcctatgtgatt 41
          |||||||||||||||||||||||||||
Sbjct: 15 tctatggctttttattcctatgtgatt 41




>RF00246;mir-135;AADN02044924.1/11852-11762 9031:Gallus gallus
          (chicken)
          Length = 91

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 15 tctatggctttttattcctatgtgatt 41
          |||||||||||||||||||||||||||
Sbjct: 15 tctatggctttttattcctatgtgatt 41




>RF00246;mir-135;AAVX01218173.1/698-790 7868:Callorhinchus milii
          (ghost shark)
          Length = 93

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 14 ctctatggctttttattcctatgtgat 40
          |||||||||||||||||||||||||||
Sbjct: 14 ctctatggctttttattcctatgtgat 40




>RF00246;mir-135;AAPN01269426.1/3344-3254 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 91

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 ctatggctttttattcctatgtgatt 41
          ||||||||||||||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgatt 41




>RF00246;mir-135;ABQF01031688.1/17601-17511 59729:Taeniopygia
          guttata
          Length = 91

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 17 tatggctttttattcctatgtgatt 41
          |||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41




>RF00246;mir-135;AANH01001634.1/39339-39250 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 90

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 16 ctatggctttttattcctatgtgat 40
          |||||||||||||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgat 40




>RF00246;mir-135;AAVX01101128.1/378-289 7868:Callorhinchus milii
          (ghost shark)
          Length = 90

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 17 tatggctttttattcctatgtgatt 41
          |||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41




>RF00246;mir-135;AADN02005966.1/161306-161395 9031:Gallus gallus
          (chicken)
          Length = 90

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40




>RF00246;mir-135;CAAB01002540.1/26990-26899 31033:Takifugu
          rubripes
          Length = 92

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40




>RF00246;mir-135;BAAE01018119.1/1524-1435 8090:Oryzias latipes
          (Japanese medaka)
          Length = 90

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 tatggctttttattcctatgtgat 40
          ||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40




>RF00246;mir-135;CR381618.15/176832-176743 7955:Danio rerio
          (zebrafish)
          Length = 90

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 17 tatggctttttattcctatgtga 39
          |||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtga 39




>RF00246;mir-135;AAPE01018078.1/3690-3601 59463:Myotis lucifugus
          (little brown bat)
          Length = 90

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 ctatggctttttattcctatgtgatt 41
          ||||||||||| ||||||||||||||
Sbjct: 16 ctatggcttttcattcctatgtgatt 41




>RF00246;mir-135;AAGU02576112.1/3465-3375 9785:Loxodonta africana
          (African savanna elephant)
          Length = 91

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 ctatggctttttattcctatgtgatt 41
          ||||||||||| ||||||||||||||
Sbjct: 16 ctatggcttttcattcctatgtgatt 41




>RF00246;mir-135;CR352232.20/105648-105557 7955:Danio rerio
          (zebrafish)
          Length = 92

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 8  actgttctctatggctttttattcctatgtgatt 41
          ||||| || ||||||||| |||||||||||||||
Sbjct: 8  actgtgctttatggctttctattcctatgtgatt 41