miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00246;mir-135;ABRQ01460659.1/5464-5553 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 131 bits (66), Expect = 2e-30
Identities = 78/82 (95%)
Strand = Plus / Plus
Query: 1 aggcctcactgttctctatggctttttattcctatgtgattctattgctcgctcatatag 60
||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1 aggcctcgctgttctctatggctttttattcctatgtgattctactgctcactcatatag 60
Query: 61 ggattggagccgtggcgtacgg 82
||||||||||||||||| ||||
Sbjct: 61 ggattggagccgtggcgcacgg 82
>RF00246;mir-135;AAPN01299361.1/1140-1229 9258:Ornithorhynchus
anatinus (platypus)
Length = 90
Score = 91.7 bits (46), Expect = 1e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 9 ctgttctctatggctttttattcctatgtgattctattgctcgctcatatagggattgga 68
|||| ||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct: 9 ctgtgctctatggctttttattcctatgtgatcctgctgctcactcatatagggattgga 68
Query: 69 gccgtg 74
||||||
Sbjct: 69 gccgtg 74
>RF00246;mir-135;AAIY01659495.1/471-383 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 89
Score = 87.7 bits (44), Expect = 2e-17
Identities = 75/84 (89%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 aggcctcactgttctctatggctttttattcctatgtgattctattgctcgctcatatag 60
||||||| ||| |||||||||||||| ||||||||||||||||| || || |||| ||||
Sbjct: 1 aggcctcgctgctctctatggcttttcattcctatgtgattcta-tggtcactcacatag 59
Query: 61 ggattggagccgtggcgtacggtg 84
|||| |||||||||||| ||||||
Sbjct: 60 ggatgggagccgtggcggacggtg 83
>RF00246;mir-135;AADN02056441.1/1410-1500 9031:Gallus gallus
(chicken)
Length = 91
Score = 65.9 bits (33), Expect = 8e-11
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 gcctcactgttctctatggctttttattcctatgtgattctattgctcgc-tcatatagg 61
|||||||||| || ||||||||||||||||||||||||| || | ||| |||||||||
Sbjct: 3 gcctcactgtcctgtatggctttttattcctatgtgattatacatcccgcttcatatagg 62
Query: 62 gattggagccgtg 74
||||| |||||||
Sbjct: 63 gattgaagccgtg 75
>RF00246;mir-135;AAWZ01006677.1/107967-108057 28377:Anolis
carolinensis (green anole)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 tctatggctttttattcctatgtgatt 41
|||||||||||||||||||||||||||
Sbjct: 15 tctatggctttttattcctatgtgatt 41
>RF00246;mir-135;AADN02044924.1/11852-11762 9031:Gallus gallus
(chicken)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 tctatggctttttattcctatgtgatt 41
|||||||||||||||||||||||||||
Sbjct: 15 tctatggctttttattcctatgtgatt 41
>RF00246;mir-135;AAVX01218173.1/698-790 7868:Callorhinchus milii
(ghost shark)
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 ctctatggctttttattcctatgtgat 40
|||||||||||||||||||||||||||
Sbjct: 14 ctctatggctttttattcctatgtgat 40
>RF00246;mir-135;AAPN01269426.1/3344-3254 9258:Ornithorhynchus
anatinus (platypus)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 ctatggctttttattcctatgtgatt 41
||||||||||||||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgatt 41
>RF00246;mir-135;ABQF01031688.1/17601-17511 59729:Taeniopygia
guttata
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 tatggctttttattcctatgtgatt 41
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>RF00246;mir-135;AANH01001634.1/39339-39250 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 ctatggctttttattcctatgtgat 40
|||||||||||||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgat 40
>RF00246;mir-135;AAVX01101128.1/378-289 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 tatggctttttattcctatgtgatt 41
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>RF00246;mir-135;AADN02005966.1/161306-161395 9031:Gallus gallus
(chicken)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tatggctttttattcctatgtgat 40
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;CAAB01002540.1/26990-26899 31033:Takifugu
rubripes
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tatggctttttattcctatgtgat 40
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;BAAE01018119.1/1524-1435 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tatggctttttattcctatgtgat 40
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;CR381618.15/176832-176743 7955:Danio rerio
(zebrafish)
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tatggctttttattcctatgtga 39
|||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtga 39
>RF00246;mir-135;AAPE01018078.1/3690-3601 59463:Myotis lucifugus
(little brown bat)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctatggctttttattcctatgtgatt 41
||||||||||| ||||||||||||||
Sbjct: 16 ctatggcttttcattcctatgtgatt 41
>RF00246;mir-135;AAGU02576112.1/3465-3375 9785:Loxodonta africana
(African savanna elephant)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctatggctttttattcctatgtgatt 41
||||||||||| ||||||||||||||
Sbjct: 16 ctatggcttttcattcctatgtgatt 41
>RF00246;mir-135;CR352232.20/105648-105557 7955:Danio rerio
(zebrafish)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 8 actgttctctatggctttttattcctatgtgatt 41
||||| || ||||||||| |||||||||||||||
Sbjct: 8 actgtgctttatggctttctattcctatgtgatt 41
