miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00246;mir-135;AADN02005966.1/161306-161395 9031:Gallus gallus
(chicken)
Length = 90
Score = 163 bits (82), Expect = 5e-40
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 7 attcactctagtgctttatggctttttattcctatgtgatcgtaataaagtctcatgtag 66
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 attcactctagtgttttatggctttttattcctatgtgatagtaataaagtctcatgtag 60
Query: 67 ggatggaagccatgaaatacattgtgaaaa 96
||||||||||||||||||||||||||||||
Sbjct: 61 ggatggaagccatgaaatacattgtgaaaa 90
>RF00246;mir-135;AAVX01101128.1/378-289 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 17 gtgctttatggctttttattcctatgtgatcgtaataaagtctcatgtagggatggaagc 76
|||||||||||||||||||||||||||||| || | | ||||||||||||| |||||
Sbjct: 11 gtgctttatggctttttattcctatgtgattgtgacatgatctcatgtagggagagaagc 70
Query: 77 catgaaataca 87
|||||||||||
Sbjct: 71 catgaaataca 81
>RF00246;mir-135;AAPN01299361.1/1140-1229 9258:Ornithorhynchus
anatinus (platypus)
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 17 gtgctttatggctttttattcctatgtgatc 47
||||| |||||||||||||||||||||||||
Sbjct: 11 gtgctctatggctttttattcctatgtgatc 41
>RF00246;mir-135;CR352232.20/105648-105557 7955:Danio rerio
(zebrafish)
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 17 gtgctttatggctttttattcctatgtgat 46
||||||||||||||| ||||||||||||||
Sbjct: 11 gtgctttatggctttctattcctatgtgat 40
>RF00246;mir-135;CAAB01002540.1/26990-26899 31033:Takifugu
rubripes
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 17 gtgctttatggctttttattcctatgtgat 46
|||| |||||||||||||||||||||||||
Sbjct: 11 gtgcattatggctttttattcctatgtgat 40
>RF00246;mir-135;AAVX01218173.1/698-790 7868:Callorhinchus milii
(ghost shark)
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 17 gtgctttatggctttttattcctatgtgat 46
||||| ||||||||||||||||||||||||
Sbjct: 11 gtgctctatggctttttattcctatgtgat 40
>RF00246;mir-135;CR381618.15/176832-176743 7955:Danio rerio
(zebrafish)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 22 ttatggctttttattcctatgtgatcgtaataaagtctcatgtagggat 70
|||||||||||||||||||||||| || | ||| |||||||||||||
Sbjct: 16 ttatggctttttattcctatgtgaaggtgaacaaggctcatgtagggat 64
>RF00246;mir-135;BAAE01018119.1/1524-1435 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 ttatggctttttattcctatgtgat 46
|||||||||||||||||||||||||
Sbjct: 16 ttatggctttttattcctatgtgat 40
>RF00246;mir-135;AAPN01269426.1/3344-3254 9258:Ornithorhynchus
anatinus (platypus)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgat 46
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;ABRQ01460659.1/5464-5553 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgat 46
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;AAWZ01006677.1/107967-108057 28377:Anolis
carolinensis (green anole)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgat 46
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;ABQF01031688.1/17601-17511 59729:Taeniopygia
guttata
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgat 46
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;AADN02056441.1/1410-1500 9031:Gallus gallus
(chicken)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgat 46
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;AADN02044924.1/11852-11762 9031:Gallus gallus
(chicken)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgat 46
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;AANH01001634.1/39339-39250 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgat 46
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;CR931939.21/9836-9927 7955:Danio rerio
(zebrafish)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 21 tttatggctttttattcctatgtgat 46
||||||||||| ||||||||||||||
Sbjct: 15 tttatggctttctattcctatgtgat 40
>RF00246;mir-135;AANH01002735.1/65484-65395 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgatcgtaataaagtctcatgtagggatggaagccatg 80
||||||||||||||||||| ||| ||| | | | |||| |||||||||||||||||
Sbjct: 17 tatggctttttattcctatctgactgtactgatggttcatatagggatggaagccatg 74
>RF00246;mir-135;BAAE01233743.1/1592-1680 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgatcgtaataaagtctcatgtagggatggaagccatg 80
||||||||||||||||||| ||| | | ||| | |||| |||||||||||||||||
Sbjct: 16 tatggctttttattcctatctgactgaactaatggttcatatagggatggaagccatg 73
