miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>32738_rno-mir-135b:mirbase
          Length = 97

 Score =  184 bits (93), Expect = 8e-48
 Identities = 96/97 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  cgctctgctgtggcctatggcttttcattcctatgtgattgctgctccgaactcatgtag 60
          |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1  cgctctgctgtggcctatggcttttcattcctatgtgattgctgttccgaactcatgtag 60

                                               
Query: 61 ggctaaaagccatgggctacagtgaggggcaagctcc 97
          |||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggctaaaagccatgggctacagtgaggggcaagctcc 97




>30836_ppy-mir-135b:mirbase
          Length = 97

 Score =  165 bits (83), Expect = 7e-42
 Identities = 92/95 (96%)
 Strand = Plus / Plus

                                                                      
Query: 3  ctctgctgtggcctatggcttttcattcctatgtgattgctgctccgaactcatgtaggg 62
          ||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||
Sbjct: 3  ctctgctgtggcctatggcttttcattcctatgtgattgctgtcccaaactcatgtaggg 62

                                             
Query: 63 ctaaaagccatgggctacagtgaggggcaagctcc 97
          |||||||||||||||||||||||||||||||||||
Sbjct: 63 ctaaaagccatgggctacagtgaggggcaagctcc 97




>27737_mml-mir-135b:mirbase
          Length = 97

 Score =  157 bits (79), Expect = 2e-39
 Identities = 91/95 (95%)
 Strand = Plus / Plus

                                                                      
Query: 3  ctctgctgtggcctatggcttttcattcctatgtgattgctgctccgaactcatgtaggg 62
          ||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||
Sbjct: 3  ctctgctgtggcctatggcttttcattcctatgtgattgctgtcccaaactcatgtaggg 62

                                             
Query: 63 ctaaaagccatgggctacagtgaggggcaagctcc 97
          |||||||||||||||||||||||||||| ||||||
Sbjct: 63 ctaaaagccatgggctacagtgaggggcgagctcc 97




>28451_hsa-mir-135b:mirbase
          Length = 97

 Score =  157 bits (79), Expect = 2e-39
 Identities = 91/95 (95%)
 Strand = Plus / Plus

                                                                      
Query: 3  ctctgctgtggcctatggcttttcattcctatgtgattgctgctccgaactcatgtaggg 62
          ||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||
Sbjct: 3  ctctgctgtggcctatggcttttcattcctatgtgattgctgtcccaaactcatgtaggg 62

                                             
Query: 63 ctaaaagccatgggctacagtgaggggcaagctcc 97
          |||||||||||||||||||||||||||| ||||||
Sbjct: 63 ctaaaagccatgggctacagtgaggggcgagctcc 97




>30226_ptr-mir-135b:mirbase
          Length = 96

 Score =  155 bits (78), Expect = 7e-39
 Identities = 90/94 (95%)
 Strand = Plus / Plus

                                                                      
Query: 3  ctctgctgtggcctatggcttttcattcctatgtgattgctgctccgaactcatgtaggg 62
          ||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||
Sbjct: 3  ctctgctgtggcctatggcttttcattcctatgtgattgctgtcccaaactcatgtaggg 62

                                            
Query: 63 ctaaaagccatgggctacagtgaggggcaagctc 96
          |||||||||||||||||||||||||||| |||||
Sbjct: 63 ctaaaagccatgggctacagtgaggggcgagctc 96




>27031_eca-mir-135b:mirbase
          Length = 89

 Score =  153 bits (77), Expect = 3e-38
 Identities = 86/89 (96%)
 Strand = Plus / Plus

                                                                      
Query: 2  gctctgctgtggcctatggcttttcattcctatgtgattgctgctccgaactcatgtagg 61
          ||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||
Sbjct: 1  gctctgctgtggcctatggcttttcattcctatgtgattgctgttctaaactcatgtagg 60

                                       
Query: 62 gctaaaagccatgggctacagtgaggggc 90
          |||||||||||||||||||||||||||||
Sbjct: 61 gctaaaagccatgggctacagtgaggggc 89




>33220_bta-mir-135b:mirbase
          Length = 95

 Score =  151 bits (76), Expect = 1e-37
 Identities = 85/88 (96%)
 Strand = Plus / Plus

                                                                      
Query: 3  ctctgctgtggcctatggcttttcattcctatgtgattgctgctccgaactcatgtaggg 62
          |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||
Sbjct: 1  ctctgctgtggcctatggcttttcattcctatgtgattactgttccaaactcatgtaggg 60

                                      
Query: 63 ctaaaagccatgggctacagtgaggggc 90
          ||||||||||||||||||||||||||||
Sbjct: 61 ctaaaagccatgggctacagtgaggggc 88




>27384_mdo-mir-135b:mirbase
          Length = 100

 Score =  149 bits (75), Expect = 4e-37
 Identities = 84/87 (96%)
 Strand = Plus / Plus

                                                                      
Query: 3  ctctgctgtggcctatggcttttcattcctatgtgattgctgctccgaactcatgtaggg 62
          |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 5  ctctgctgtggcctatggcttttcattcctatgtgattgctgttcccaactcatgtaggg 64

                                     
Query: 63 ctaaaagccatgggctacagtgagggg 89
          |||||||||||||||||||| ||||||
Sbjct: 65 ctaaaagccatgggctacagggagggg 91




>26708_cfa-mir-135b:mirbase
          Length = 89

 Score =  145 bits (73), Expect = 7e-36
 Identities = 85/89 (95%)
 Strand = Plus / Plus

                                                                      
Query: 2  gctctgctgtggcctatggcttttcattcctatgtgattgctgctccgaactcatgtagg 61
          ||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||
Sbjct: 1  gctctgctgtggcctatggcttttcattcctatgtgattgctgtttctaattcatgtagg 60

                                       
Query: 62 gctaaaagccatgggctacagtgaggggc 90
          |||||||||||||||||||||||||||||
Sbjct: 61 gctaaaagccatgggctacagtgaggggc 89




>31492_oan-mir-135b:mirbase
          Length = 114

 Score =  133 bits (67), Expect = 3e-32
 Identities = 82/87 (94%)
 Strand = Plus / Plus

                                                                       
Query: 3   ctctgctgtggcctatggcttttcattcctatgtgattgctgctccgaactcatgtaggg 62
           ||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||
Sbjct: 18  ctctgctgtggcctatggctttttattcctatgtgattgctgctttgaactcatgtaggg 77

                                      
Query: 63  ctaaaagccatgggctacagtgagggg 89
           || ||||||||||||||||| ||||||
Sbjct: 78  ctgaaagccatgggctacagagagggg 104




>25956_gga-mir-135a-3:mirbase
          Length = 96

 Score =  107 bits (54), Expect = 1e-24
 Identities = 72/78 (92%)
 Strand = Plus / Plus

                                                                      
Query: 3  ctctgctgtggcctatggcttttcattcctatgtgattgctgctccgaactcatgtaggg 62
          ||||||||||| ||||||||||| |||||||||||||||||  ||| |||||||||||||
Sbjct: 3  ctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtaggg 62

                            
Query: 63 ctaaaagccatgggctac 80
          | ||||||||||||||||
Sbjct: 63 cgaaaagccatgggctac 80




>26466_tgu-mir-135a-2:mirbase
          Length = 86

 Score =  101 bits (51), Expect = 9e-23
 Identities = 72/79 (91%)
 Strand = Plus / Plus

                                                                      
Query: 3  ctctgctgtggcctatggcttttcattcctatgtgattgctgctccgaactcatgtaggg 62
          |||||||||||  |||||||||| |||||||||||||||||   ||||||||||||||||
Sbjct: 2  ctctgctgtggtttatggctttttattcctatgtgattgctttcccgaactcatgtaggg 61

                             
Query: 63 ctaaaagccatgggctaca 81
          | |||||||||||||||||
Sbjct: 62 cgaaaagccatgggctaca 80




>25487_pma-mir-135a:mirbase
          Length = 86

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 16 tatggcttttcattcctatgtgattgct 43
          |||||||||| |||||||||||||||||
Sbjct: 15 tatggctttttattcctatgtgattgct 42




>25781_xtr-mir-135-2:mirbase
          Length = 88

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 16 tatggcttttcattcctatgtgattgct 43
          |||||||||| |||||||||||||||||
Sbjct: 16 tatggctttttattcctatgtgattgct 43




>26705_cfa-mir-135a-1:mirbase
          Length = 87

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 ctatggcttttcattcctatgtgatt 40
          ||||||||||| ||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgatt 41




>27029_eca-mir-135a:mirbase
          Length = 60

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 ctatggcttttcattcctatgtgatt 40
          ||||||||||| ||||||||||||||
Sbjct: 1  ctatggctttttattcctatgtgatt 26




>27512_age-mir-135-1:mirbase
          Length = 90

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 ctatggcttttcattcctatgtgatt 40
          ||||||||||| ||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgatt 41




>27574_lla-mir-135-1:mirbase
          Length = 90

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 ctatggcttttcattcctatgtgatt 40
          ||||||||||| ||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgatt 41




>27735_mml-mir-135a-1:mirbase
          Length = 90

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 ctatggcttttcattcctatgtgatt 40
          ||||||||||| ||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgatt 41




>28449_hsa-mir-135a-1:mirbase
          Length = 90

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 ctatggcttttcattcctatgtgatt 40
          ||||||||||| ||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgatt 41




>30093_ppa-mir-135-1:mirbase
          Length = 90

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 ctatggcttttcattcctatgtgatt 40
          ||||||||||| ||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgatt 41




>30224_ptr-mir-135a-1:mirbase
          Length = 89

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 ctatggcttttcattcctatgtgatt 40
          ||||||||||| ||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgatt 41




>30835_ppy-mir-135a-1:mirbase
          Length = 90

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 ctatggcttttcattcctatgtgatt 40
          ||||||||||| ||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgatt 41




>31863_mmu-mir-135a-1:mirbase
          Length = 90

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 ctatggcttttcattcctatgtgatt 40
          ||||||||||| ||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgatt 41




>33218_bta-mir-135a-1:mirbase
          Length = 90

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 ctatggcttttcattcctatgtgatt 40
          ||||||||||| ||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgatt 41




>33986_ssc-mir-135-1:mirbase
          Length = 90

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 ctatggcttttcattcctatgtgatt 40
          ||||||||||| ||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgatt 41




>25954_gga-mir-135a-1:mirbase
          Length = 88

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 16 tatggcttttcattcctatgtgatt 40
          |||||||||| ||||||||||||||
Sbjct: 15 tatggctttttattcctatgtgatt 39




>26467_tgu-mir-135b:mirbase
          Length = 73

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 16 tatggcttttcattcctatgtgatt 40
          |||||||||| ||||||||||||||
Sbjct: 11 tatggctttttattcctatgtgatt 35




>25780_xtr-mir-135-1:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>25955_gga-mir-135a-2:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>26465_tgu-mir-135a-1:mirbase
          Length = 73

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 11 tatggctttttattcctatgtgat 34




>26706_cfa-mir-135a-2:mirbase
          Length = 62

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 2  tatggctttttattcctatgtgat 25




>26707_cfa-mir-135a-2:mirbase
          Length = 62

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 2  tatggctttttattcctatgtgat 25




>27030_eca-mir-135a-2:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>27383_mdo-mir-135a:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>27513_age-mir-135-2:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>27575_lla-mir-135-2:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>27736_mml-mir-135a-2:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>28306_ggo-mir-135:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>28450_hsa-mir-135a-2:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>30094_ppa-mir-135-2:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>30225_ptr-mir-135a-2:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>30834_ppy-mir-135:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>31491_oan-mir-135a:mirbase
          Length = 109

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 29 tatggctttttattcctatgtgat 52




>31864_mmu-mir-135a-2:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>32737_rno-mir-135a:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>33219_bta-mir-135a-2:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46




>33987_ssc-mir-135-2:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tatggcttttcattcctatgtgat 39
          |||||||||| |||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46