miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32507_mmu-mir-3071:mirbase
Length = 80
Score = 123 bits (62), Expect = 1e-29
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 1 gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 12
Query: 61 tc 62
||
Sbjct: 11 tc 10
>32739_rno-mir-136:mirbase
Length = 82
Score = 123 bits (62), Expect = 1e-29
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 1 gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 70
Query: 61 tc 62
||
Sbjct: 71 tc 72
>27032_eca-mir-136:mirbase
Length = 62
Score = 115 bits (58), Expect = 3e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 gaggactccatttgttttgatgatggattcttacgctccatcatcgtctcaaatgagtct 60
Query: 61 tc 62
||
Sbjct: 61 tc 62
>27738_mml-mir-136:mirbase
Length = 92
Score = 115 bits (58), Expect = 3e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 16 gaggactccatttgttttgatgatggattcttatgctccatcatcgtctcaaatgagtct 75
Query: 61 tc 62
||
Sbjct: 76 tc 77
>28307_ggo-mir-136:mirbase
Length = 82
Score = 115 bits (58), Expect = 3e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 gaggactccatttgttttgatgatggattcttatgctccatcatcgtctcaaatgagtct 70
Query: 61 tc 62
||
Sbjct: 71 tc 72
>28452_hsa-mir-136:mirbase
Length = 82
Score = 115 bits (58), Expect = 3e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 gaggactccatttgttttgatgatggattcttatgctccatcatcgtctcaaatgagtct 70
Query: 61 tc 62
||
Sbjct: 71 tc 72
>30095_ppa-mir-136:mirbase
Length = 82
Score = 115 bits (58), Expect = 3e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 gaggactccatttgttttgatgatggattcttatgctccatcatcgtctcaaatgagtct 70
Query: 61 tc 62
||
Sbjct: 71 tc 72
>30227_ptr-mir-136:mirbase
Length = 82
Score = 115 bits (58), Expect = 3e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 gaggactccatttgttttgatgatggattcttatgctccatcatcgtctcaaatgagtct 70
Query: 61 tc 62
||
Sbjct: 71 tc 72
>30837_ppy-mir-136:mirbase
Length = 82
Score = 115 bits (58), Expect = 3e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 gaggactccatttgttttgatgatggattcttatgctccatcatcgtctcaaatgagtct 70
Query: 61 tc 62
||
Sbjct: 71 tc 72
>33221_bta-mir-136:mirbase
Length = 92
Score = 115 bits (58), Expect = 3e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 16 gaggactccatttgttttgatgatggattcttacgctccatcatcgtctcaaatgagtct 75
Query: 61 tc 62
||
Sbjct: 76 tc 77
>33798_oar-mir-136:mirbase
Length = 92
Score = 115 bits (58), Expect = 3e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 16 gaggactccatttgttttgatgatggattcttacgctccatcatcgtctcaaatgagtct 75
Query: 61 tc 62
||
Sbjct: 76 tc 77
>33988_ssc-mir-136:mirbase
Length = 82
Score = 115 bits (58), Expect = 3e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 gaggactccatttgttttgatgatggattcttacgctccatcatcgtctcaaatgagtct 70
Query: 61 tc 62
||
Sbjct: 71 tc 72
>26709_cfa-mir-136:mirbase
Length = 56
Score = 103 bits (52), Expect = 1e-23
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 5 actccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 actccatttgttttgatgatggattcttacgctccatcatcgtctcaaatgagtct 56
