miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>32507_mmu-mir-3071:mirbase
          Length = 80

 Score =  123 bits (62), Expect = 1e-29
 Identities = 62/62 (100%)
 Strand = Plus / Minus

                                                                      
Query: 1  gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 12

            
Query: 61 tc 62
          ||
Sbjct: 11 tc 10




>32739_rno-mir-136:mirbase
          Length = 82

 Score =  123 bits (62), Expect = 1e-29
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 70

            
Query: 61 tc 62
          ||
Sbjct: 71 tc 72




>27032_eca-mir-136:mirbase
          Length = 62

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1  gaggactccatttgttttgatgatggattcttacgctccatcatcgtctcaaatgagtct 60

            
Query: 61 tc 62
          ||
Sbjct: 61 tc 62




>27738_mml-mir-136:mirbase
          Length = 92

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 16 gaggactccatttgttttgatgatggattcttatgctccatcatcgtctcaaatgagtct 75

            
Query: 61 tc 62
          ||
Sbjct: 76 tc 77




>28307_ggo-mir-136:mirbase
          Length = 82

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 gaggactccatttgttttgatgatggattcttatgctccatcatcgtctcaaatgagtct 70

            
Query: 61 tc 62
          ||
Sbjct: 71 tc 72




>28452_hsa-mir-136:mirbase
          Length = 82

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 gaggactccatttgttttgatgatggattcttatgctccatcatcgtctcaaatgagtct 70

            
Query: 61 tc 62
          ||
Sbjct: 71 tc 72




>30095_ppa-mir-136:mirbase
          Length = 82

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 gaggactccatttgttttgatgatggattcttatgctccatcatcgtctcaaatgagtct 70

            
Query: 61 tc 62
          ||
Sbjct: 71 tc 72




>30227_ptr-mir-136:mirbase
          Length = 82

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 gaggactccatttgttttgatgatggattcttatgctccatcatcgtctcaaatgagtct 70

            
Query: 61 tc 62
          ||
Sbjct: 71 tc 72




>30837_ppy-mir-136:mirbase
          Length = 82

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 gaggactccatttgttttgatgatggattcttatgctccatcatcgtctcaaatgagtct 70

            
Query: 61 tc 62
          ||
Sbjct: 71 tc 72




>33221_bta-mir-136:mirbase
          Length = 92

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 16 gaggactccatttgttttgatgatggattcttacgctccatcatcgtctcaaatgagtct 75

            
Query: 61 tc 62
          ||
Sbjct: 76 tc 77




>33798_oar-mir-136:mirbase
          Length = 92

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 16 gaggactccatttgttttgatgatggattcttacgctccatcatcgtctcaaatgagtct 75

            
Query: 61 tc 62
          ||
Sbjct: 76 tc 77




>33988_ssc-mir-136:mirbase
          Length = 82

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gaggactccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 gaggactccatttgttttgatgatggattcttacgctccatcatcgtctcaaatgagtct 70

            
Query: 61 tc 62
          ||
Sbjct: 71 tc 72




>26709_cfa-mir-136:mirbase
          Length = 56

 Score =  103 bits (52), Expect = 1e-23
 Identities = 55/56 (98%)
 Strand = Plus / Plus

                                                                  
Query: 5  actccatttgttttgatgatggattcttaagctccatcatcgtctcaaatgagtct 60
          ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1  actccatttgttttgatgatggattcttacgctccatcatcgtctcaaatgagtct 56