miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32741_rno-mir-138-1:mirbase
Length = 99
Score = 168 bits (85), Expect = 5e-43
Identities = 94/97 (96%)
Strand = Plus / Plus
Query: 1 ctctagcatggtgttgtgggacagctggtgttgtgaatcaggccgttgccaatcagagaa 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctctggcatggtgttgtgggacagctggtgttgtgaatcaggccgttgccaatcagagaa 60
Query: 61 cggctacttcacaacaccagggccacactgcactgca 97
|||||||||||||||||||||| | ||||||||||||
Sbjct: 61 cggctacttcacaacaccagggtctcactgcactgca 97
>28454_hsa-mir-138-1:mirbase
Length = 99
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 6 gcatggtgttgtgggacagctggtgttgtgaatcaggccgttgccaatcagagaacggct 65
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gcatggtgtggtggggcagctggtgttgtgaatcaggccgttgccaatcagagaacggct 65
Query: 66 acttcacaacaccagggccacac 88
|||||||||||||||||||||||
Sbjct: 66 acttcacaacaccagggccacac 88
>33223_bta-mir-138-1:mirbase
Length = 97
Score = 121 bits (61), Expect = 1e-28
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 16 gtgggacagctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaac 75
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 14 gtggggcagctggtgttgtgaatcaggccgtcgccaatcagagaacggctacttcacaac 73
Query: 76 accagggccacac 88
||||||| |||||
Sbjct: 74 accagggtcacac 86
>26711_cfa-mir-138a:mirbase
Length = 62
Score = 119 bits (60), Expect = 4e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 23 agctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccaggg 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccaggg 60
>27035_eca-mir-138-2:mirbase
Length = 59
Score = 117 bits (59), Expect = 2e-27
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 23 agctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccagg 81
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccagg 59
>26469_tgu-mir-138-1:mirbase
Length = 73
Score = 91.7 bits (46), Expect = 9e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 21 acagctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccag 80
|||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct: 9 acagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccag 68
Query: 81 gg 82
||
Sbjct: 69 gg 70
>25785_xtr-mir-138:mirbase
Length = 85
Score = 89.7 bits (45), Expect = 4e-19
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccagg 81
||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||
Sbjct: 14 cagctggtgttgtgaatcaggccgtgaccactcagaaaacggctacttcacaacaccagg 73
Query: 82 g 82
|
Sbjct: 74 g 74
>25959_gga-mir-138-1:mirbase
Length = 96
Score = 89.7 bits (45), Expect = 4e-19
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccagg 81
||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct: 21 cagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccagg 80
Query: 82 g 82
|
Sbjct: 81 g 81
>31495_oan-mir-138-1:mirbase
Length = 137
Score = 81.8 bits (41), Expect = 9e-17
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggccgttgccaatcagagaacggctacttc 70
||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 89 cagctggtgttgtgaatcaggccgtcgccaatctgagaacggctacttc 137
>25491_pma-mir-138a:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggccg 45
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>25960_gga-mir-138-2:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggccg 45
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>26470_tgu-mir-138-2:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggccg 45
||||||||||||||||||||||||
Sbjct: 10 cagctggtgttgtgaatcaggccg 33
>27034_eca-mir-138:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggccg 45
||||||||||||||||||||||||
Sbjct: 9 cagctggtgttgtgaatcaggccg 32
>27386_mdo-mir-138:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggccg 45
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>27740_mml-mir-138:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggccg 45
||||||||||||||||||||||||
Sbjct: 9 cagctggtgttgtgaatcaggccg 32
>28455_hsa-mir-138-2:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggccg 45
||||||||||||||||||||||||
Sbjct: 9 cagctggtgttgtgaatcaggccg 32
>30229_ptr-mir-138:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggccg 45
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>30839_ppy-mir-138-2:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggccg 45
||||||||||||||||||||||||
Sbjct: 9 cagctggtgttgtgaatcaggccg 32
>31496_oan-mir-138-2:mirbase
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggccg 45
||||||||||||||||||||||||
Sbjct: 26 cagctggtgttgtgaatcaggccg 49
>31869_mmu-mir-138-2:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggccg 45
||||||||||||||||||||||||
Sbjct: 1 cagctggtgttgtgaatcaggccg 24
>32742_rno-mir-138-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggccg 45
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>33224_bta-mir-138-2:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggccg 45
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>34307_dre-mir-138:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggccg 45
||||||||||||||||||||||||
Sbjct: 10 cagctggtgttgtgaatcaggccg 33
>34601_fru-mir-138:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggccg 45
||||||||||||||||||||||||
Sbjct: 5 cagctggtgttgtgaatcaggccg 28
>34748_tni-mir-138:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggccg 45
||||||||||||||||||||||||
Sbjct: 5 cagctggtgttgtgaatcaggccg 28
>25492_pma-mir-138b:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcaggc 43
||||||||||||||||||||||
Sbjct: 14 cagctggtgttgtgaatcaggc 35
